Hg_chrom5_TN10mRNA_11009
Organism: Heterodera glycines Gene Locus: chr5:11642161-11645615 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.932 | 0.981 | 0.959 | 0.145 | 0.738 | 1.461 | 0.753 | 0.844 | 1.406 | 0.741 | 1.215 | 0.993 | 1.231 | 1.785 | 0.904 | 1.085 | 0.934 | 1.151 | 0.487 | 0.807 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10377
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.874
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKERKASAKTAPKKNKEDAKKQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.279
|
0.209
|
0.030
|
0.696
|
0.137
|
0.170
|
0.189
|
0.049
|
0.370
|
0.171
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010122
|
1.000
|
1.000
|
Hsc_gene_14431.t1
|
Hsc_gene_14431.t1;Hsc_gene_14431.t2
|
— |
P46436.3 Glutathione S-transferase 1 [Ascaris suum]
|
KAI1711871.1 putative glutathione S-transferase 6 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.844|GO:0009987_0.673|GO:0003674_0.664|GO:0005575_0.621|GO:0110165_0.614|GO:0005622_0.547|GO:0050896_0.534
|
IPR004045+269-346_273-340+|IPR004046+384-468+|IPR010987+348-473+|IPR036249+270-343+|IPR036282+345-468+|IPR050213+271-469+
|
— |
PF02798+273-340+Glutathione_S-transferase,_N-terminal_domain|PF14497+384-468+Glutathione_S-transferase,_C-terminal_domain
|
G3DSA:1.20.1050.10:FF:000031+343-457+Glutathione_S-Transferase|G3DSA:3.40.30.10:FF:000258+268-346+Glutathione_S-transferase
|
PTHR11571+271-469+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
81-256
|
2.000
|
1-80;257-474
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.934
|
52078.440
|
9.945
|
17.000
|
23.840
|
9.494
|
47.046
|
52.954
|
14.135
|
9.705
|
54.430
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
159.174
|
45.665
|
4.372
|
8.111
|
45.742
|
133.248
|
41.604
|
60.991
|
75.226
|
512.565
|
325.134
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.622
|
-2.629
|
— |
2.463
|
1.558
|
-1.669
|
-1.245
|
— | — | — | — | — | — |
No JSON data available for plots.