Hg_chrom5_TN10mRNA_11013
Organism: Heterodera glycines Gene Locus: chr5:11672934-11677685 Feature type: polypeptideProtein Sequence
Length: 561
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.912 | 0.705 | 0.713 | 0.738 | 0.564 | 0.868 | 0.594 | 0.802 | 1.862 | 1.542 | 0.594 | 1.468 | 3.02 | 0.686 | 0.909 | 1.019 | 0.877 | 1.08 | 1.234 | 0.996 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10381
|
— | — |
1.111
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.058
|
0.074
|
0.036
|
0.129
|
0.271
|
0.738
|
0.391
|
0.042
|
0.474
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004230
|
1.000
|
2.000
|
Hsc_gene_19444.t1;Hsc_gene_19444.t2
|
Hsc_gene_19444.t1;Hsc_gene_19444.t2;Hsc_gene_19445.t1
|
— |
P35449.2 Probable Na(+)/H(+) antiporter nhx-9 [Caenorhabditis elegans]
|
KAF7633493.1 Sodium/hydrogen exchanger, partial [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006812|GO:0006814|GO:0006885|GO:0015297|GO:0015385|GO:0016020|GO:0055085|GO:1902600
|
GO:0008150_0.914|GO:0006810_0.854|GO:0051179_0.854|GO:0051234_0.854|GO:0005575_0.829|GO:0110165_0.824|GO:0016020_0.807|GO:0009987_0.795|GO:0071944_0.791|GO:0005886_0.787|GO:0055085_0.734|GO:0006811_0.723|GO:0003674_0.707|GO:0005215_0.701|GO:0022857_0.701|GO:0034220_0.664|GO:0098660_0.648|GO:0015075_0.632|GO:0006812_0.624|GO:0098655_0.624|GO:0098662_0.608|GO:0015318_0.604|GO:0008324_0.602|GO:0030001_0.602|GO:0006814_0.588|GO:0035725_0.578|GO:0022890_0.572|GO:0046873_0.570|GO:0015081_0.558|GO:0022804_0.557|GO:0015291_0.546|GO:0022853_0.544|GO:1902600_0.513|GO:0005622_0.508|GO:0015297_0.501
|
IPR004709+74-543_141-152_155-169_170-178_211-221+|IPR006153+89-485+|IPR018422+59-501+
|
— |
PF00999+89-485+Sodium/hydrogen_exchanger_family
|
— |
PTHR10110+59-501+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
549-561
|
1.000
|
1-548
|
2mdf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
63874.120
|
8.333
|
10.500
|
17.291
|
17.469
|
36.185
|
63.815
|
9.982
|
7.308
|
45.098
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
424.531
|
270.006
|
105.090
|
110.138
|
137.019
|
493.397
|
93.206
|
79.997
|
0.691
|
1373.484
|
785.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.589
|
-1.431
|
— |
0.283
|
1.864
|
-2.399
|
-2.735
|
— |
-10.750
|
7.157
|
— | — | — |
No JSON data available for plots.