Hg_chrom5_TN10mRNA_11014
Organism: Heterodera glycines Gene Locus: chr5:11678468-11684348 Feature type: polypeptideProtein Sequence
Length: 741
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.769 | 1.067 | 0.564 | 0.465 | 0.765 | 0.969 | 0.627 | 0.81 | 1.919 | 1.404 | 0.716 | 1.905 | 2.474 | 0.571 | 1.074 | 1.195 | 1.106 | 0.879 | 0.83 | 0.873 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10382
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_Clustered
|
0.627
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
endoplasmic_reticulum
|
nucleus
|
KKTTFLFRRESSLPTRTRR
|
— | — | — | — |
1-24
|
0.797
|
0.903
|
9.000
|
9.000
|
0.088
|
0.081
|
0.009
|
0.195
|
0.624
|
0.508
|
0.263
|
0.024
|
0.509
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004231
|
1.000
|
2.000
|
Hsc_gene_19446.t1;Hsc_gene_19446.t2
|
Hsc_gene_19446.t1;Hsc_gene_19446.t2;Hsc_gene_19447.t1
|
— |
P35449.2 Probable Na(+)/H(+) antiporter nhx-9 [Caenorhabditis elegans]
|
KAI1721766.1 sodium/hydrogen exchanger family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006812|GO:0006814|GO:0006885|GO:0015297|GO:0015385|GO:0016020|GO:0055085|GO:1902600
|
GO:0008150_0.907|GO:0005575_0.839|GO:0110165_0.838|GO:0051179_0.821|GO:0016020_0.819|GO:0051234_0.812|GO:0006810_0.811|GO:0009987_0.793|GO:0005886_0.754|GO:0071944_0.754|GO:0003674_0.699|GO:0055085_0.656|GO:0006811_0.655|GO:0005215_0.606|GO:0022857_0.603|GO:0034220_0.593|GO:0098660_0.575|GO:0005622_0.566|GO:0015075_0.566|GO:0043226_0.563|GO:0006812_0.557|GO:0098655_0.557|GO:0030001_0.554|GO:0098662_0.548|GO:0006814_0.542|GO:0043229_0.540|GO:0008324_0.538|GO:0015318_0.533|GO:0035725_0.529|GO:0022890_0.519|GO:0046873_0.519|GO:0015081_0.505
|
IPR004709+67-612_124-135_138-152_153-161_194-204+|IPR006153+81-471+|IPR018422+81-677+
|
— |
PF00999+81-471+Sodium/hydrogen_exchanger_family
|
— |
PTHR10110+81-677+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
637-741
|
1.000
|
1-636
|
7dsx_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.795
|
84235.240
|
9.556
|
23.000
|
19.298
|
14.575
|
42.780
|
57.220
|
11.606
|
7.692
|
44.804
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
purple
|
223.820
|
116.402
|
254.096
|
216.057
|
128.200
|
227.225
|
264.267
|
283.214
|
45.099
|
386.840
|
240.380
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
0.755
|
— |
-0.783
|
0.840
|
— | — | — | — | — | — | — | — |