Hg_chrom5_TN10mRNA_11015
Organism: Heterodera glycines Gene Locus: chr5:11685499-11686733 Feature type: polypeptideProtein Sequence
Length: 193
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.964 | 1.807 | 0.377 | 0.0 | 0.864 | 0.797 | 1.11 | 2.332 | 1.382 | 1.05 | 1.178 | 0.914 | 1.439 | 1.295 | 0.846 | 1.184 | 1.274 | 0.471 | 0.0 | 0.305 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10383
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_19578
|
— |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
— |
22-48
|
0.963
|
31-67
|
0.958
|
1-23
|
0.919
|
0.594
|
0.000
|
0.000
|
0.213
|
0.350
|
0.313
|
0.473
|
0.392
|
0.112
|
0.308
|
0.061
|
0.252
|
0.666
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004232
|
2.000
|
1.000
|
Hsc_gene_19498.t1
|
— | — |
Q86RQ1.1 CLAVATA3/ESR (CLE)-related protein 2 [Heterodera glycines]
|
Q86RQ1.1 CLAVATA3/ESR (CLE)-related protein 2 [Heterodera glycines]
|
KAK6427650
|
0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR039616+1-127+
|
— | — | — |
PTHR33869+1-127+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
66-193
|
1.000
|
1-65
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.956
|
20834.580
|
10.662
|
13.500
|
23.834
|
10.881
|
50.777
|
49.223
|
16.580
|
7.254
|
53.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
427.486
|
4.749
|
7.376
|
290.044
|
246.429
|
16.935
|
76.502
|
43.043
|
20.732
|
1597.797
|
921.912
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.796
|
5.407
|
-0.266
|
-3.850
|
2.189
|
1.227
|
0.980
|
-6.385
|
— | — | — | — |