Hg_chrom5_TN10mRNA_11021
Organism: Heterodera glycines Gene Locus: chr5:11698355-11704179 Feature type: polypeptideProtein Sequence
Length: 457
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.043 | 1.527 | 0.477 | 0.453 | 0.766 | 1.122 | 0.808 | 1.422 | 0.973 | 1.479 | 0.564 | 2.317 | 1.216 | 1.094 | 1.161 | 1.188 | 1.04 | 0.564 | 0.673 | 1.158 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10386
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.044
|
0.241
|
0.028
|
0.290
|
0.218
|
0.262
|
0.190
|
0.021
|
0.497
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010126
|
1.000
|
1.000
|
Hsc_gene_19453.t1
|
Hsc_gene_19453.t1;Hsc_gene_769.t1;Hsc_gene_769.t2
|
— |
Q19746.2 Innexin-3 [Caenorhabditis elegans]
|
KAF7630942.1 Innexin [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.884|GO:0110165_0.884|GO:0008150_0.874|GO:0009987_0.748|GO:0030054_0.628|GO:0051179_0.592|GO:0003674_0.590|GO:0006810_0.583|GO:0051234_0.583|GO:0065007_0.582|GO:0032501_0.557|GO:0050789_0.557|GO:0016020_0.556|GO:0005911_0.523|GO:0070161_0.523|GO:0071944_0.523|GO:0005886_0.515|GO:0005921_0.501
|
IPR000990+1-246_2-276_4-237_63-77_111-120_135-151+
|
— |
PF00876+4-237+Innexin
|
— |
PTHR11893+2-276+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
252-457
|
1.000
|
1-251
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
50780.060
|
9.404
|
16.500
|
19.475
|
12.035
|
45.077
|
54.923
|
12.254
|
7.221
|
50.328
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
371.531
|
311.222
|
71.177
|
84.386
|
136.128
|
110.249
|
560.475
|
56.277
|
106.199
|
1047.079
|
643.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.357
|
-2.020
|
0.353
|
0.657
|
— |
2.353
|
-1.079
|
3.457
|
-3.442
|
— |
-2.697
|
— | — |
No JSON data available for plots.