Hg_chrom5_TN10mRNA_11023
Organism: Heterodera glycines Gene Locus: chr5:11713907-11732184 Feature type: polypeptideProtein Sequence
Length: 2,508
(Signal peptide: 1-33)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.631 | 1.437 | 0.877 | 0.522 | 1.542 | 1.278 | 0.446 | 1.037 | 1.657 | 1.422 | 1.48 | 1.947 | 1.351 | 0.506 | 0.928 | 0.826 | 0.784 | 0.58 | 1.319 | 0.821 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10388
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KKWK,LKKKKK,KKLKDKLEREEDEKKQRE,KKEAMQIYESIMAQRERAK,KKLGQQMAARQTEKRKRRL,KRKRRLESEQKRKLERQRR,RKRRLESEQKRKLERQRRR,KRRLESEQKRKLERQRRRG,RRLESEQKRKLERQRRRGA,KKIDIKLDEEDEEMKMVRK
|
— | — | — | — |
1-33
|
— |
0.550
|
— |
0.000
|
0.602
|
0.165
|
0.006
|
0.542
|
0.085
|
0.126
|
0.097
|
0.016
|
0.084
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002267
|
2.000
|
2.000
|
Hsc_gene_19457.t1;Hsc_gene_19457.t2
|
— | — | — |
XP_053692000.1 poly(A) polymerase type 3-like [Sabethes cyaneus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.756|GO:0110165_0.756|GO:0005622_0.717|GO:0016020_0.661|GO:0043226_0.644|GO:0043229_0.622|GO:0008150_0.594|GO:0043227_0.569|GO:0043231_0.541
|
IPR007012+2186-2319+|IPR011068+2340-2438+|IPR043519+2013-2127_2024-2172+
|
— |
PF04928+2186-2319+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+2014-2460+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
750-888;1554-1730;2500-2508
|
3.000
|
1-749;889-1553;1731-2499
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.574
|
292883.490
|
7.848
|
32.000
|
30.463
|
11.443
|
52.193
|
47.807
|
16.388
|
14.075
|
38.716
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1802.531
|
7.215
|
326.464
|
220.927
|
58.792
|
21.250
|
24.383
|
21.812
|
4754.956
|
4064.542
|
4360.434
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.276
|
4.803
|
-0.455
|
-1.944
|
-1.452
|
— | — | — | — |
-4.264
|
-5.776
|
— | — |