Hg_chrom5_TN10mRNA_11024
Organism: Heterodera glycines Gene Locus: chr5:11732842-11737559 Feature type: polypeptideProtein Sequence
Length: 580
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.621 | 1.764 | 0.846 | 3.389 | 0.747 | 2.299 | 1.006 | 0.517 | 0.69 | 0.582 | 0.209 | 0.811 | 0.718 | 1.393 | 1.83 | 1.133 | 0.876 | 0.549 | 0.663 | 0.862 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10389
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-22
|
0.912
|
1.000
|
0.000
|
0.000
|
0.157
|
0.179
|
0.010
|
0.263
|
0.037
|
0.056
|
0.031
|
0.020
|
0.247
|
0.937
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010128
|
1.000
|
1.000
|
Hsc_gene_19459.t1
|
Hsc_gene_19459.t1
|
— | — |
NP_500134.2 EGF-like domain-containing protein [Caenorhabditis elegans];CCD72809.1 EGF-like domain-containing protein [Caenorhabditis elegans]
|
No
|
-0.260
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006150+444-475_483-514_515-542_543-573+
|
SM00289+444-475_483-514_515-542_543-573+
|
— | — |
PTHR34150+358-544+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
207-258
|
2.000
|
1-206;259-580
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
64142.300
|
7.631
|
10.000
|
20.517
|
7.414
|
50.345
|
49.655
|
11.379
|
9.138
|
60.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
499.820
|
54.911
|
168.894
|
111.656
|
53.748
|
56.469
|
51.351
|
165.469
|
921.009
|
1247.518
|
1107.585
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.394
|
0.887
|
-0.491
|
-1.086
|
— | — |
1.450
|
-1.545
|
— |
-2.853
|
-4.279
|
— | — |