Hg_chrom5_TN10mRNA_11034
Organism: Heterodera glycines Gene Locus: chr5:11779726-11783895 Feature type: polypeptideProtein Sequence
Length: 396
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.028 | 1.586 | 0.735 | 0.871 | 0.842 | 1.036 | 0.842 | 1.263 | 0.898 | 1.092 | 0.65 | 1.188 | 1.263 | 1.02 | 1.082 | 1.19 | 0.911 | 0.88 | 1.36 | 1.188 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10398
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
mitochondria
|
— |
40-60
|
0.973
|
— | — |
1-22
|
0.822
|
0.952
|
0.000
|
0.000
|
0.166
|
0.293
|
0.190
|
0.292
|
0.242
|
0.425
|
0.575
|
0.043
|
0.398
|
0.698
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010130
|
1.000
|
1.000
|
Hsc_gene_19469.t1
|
Hsc_gene_19469.t1
|
— |
Q9XTR8.1 Lipase ZK262.3 [Caenorhabditis elegans]
|
AVA09683.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006629
|
GO:0003674_0.868|GO:0005575_0.817|GO:0110165_0.805|GO:0003824_0.740|GO:0016787_0.692|GO:0016788_0.664|GO:0052689_0.650|GO:0016020_0.639|GO:0005622_0.613|GO:0008150_0.598|GO:0043226_0.565|GO:0043229_0.552|GO:0005737_0.532
|
IPR002921+104-237+|IPR029058+30-336_35-334+
|
— |
PF01764+104-237+Lipase_(class_3)
|
— |
PTHR45908+12-344+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-396
|
3ngm_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.863
|
43981.620
|
7.811
|
7.000
|
21.212
|
12.879
|
45.960
|
54.040
|
12.121
|
9.091
|
54.293
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
brown
|
495.015
|
240.440
|
1270.390
|
365.916
|
296.448
|
556.492
|
360.136
|
2532.011
|
3.101
|
55.179
|
32.860
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.174
|
0.469
|
-1.688
|
-0.335
|
0.923
|
-0.618
|
2.087
|
-2.673
|
— |
7.149
|
— | — | — |