Hg_chrom5_TN10mRNA_11037
Organism: Heterodera glycines Gene Locus: chr5:11792564-11793895 Feature type: polypeptideProtein Sequence
Length: 251
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.066 | 1.019 | 1.449 | 0.275 | 1.793 | 1.532 | 0.664 | 0.398 | 0.797 | 1.346 | 1.268 | 1.64 | 0.664 | 0.383 | 0.976 | 0.968 | 0.588 | 0.785 | 0.613 | 1.289 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10401
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-Not_Clustered
|
0.588
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.490
|
0.283
|
0.048
|
0.677
|
0.158
|
0.380
|
0.490
|
0.096
|
0.134
|
0.214
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003300
|
2.000
|
1.000
|
Hsc_gene_19470.t1
|
Hsc_gene_19470.t1
|
F52D10.3a
|
Q20655.1 14-3-3-like protein 2 [Caenorhabditis elegans]
|
AVA09681.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.917|GO:0005575_0.853|GO:0110165_0.848|GO:0009987_0.817|GO:0003674_0.743|GO:0005622_0.742|GO:0005488_0.741|GO:0065007_0.686|GO:0005515_0.650|GO:0005737_0.649|GO:0050789_0.642|GO:0043226_0.618|GO:0051179_0.603|GO:0050794_0.600|GO:0016020_0.598
|
IPR000308+1-242_5-235_37-66_84-108_115-137_150-176_177-203_204-233+|IPR023409+43-53_213-232+|IPR023410+5-244_12-231+|IPR036815+1-243_4-233+
|
SM00101+5-244+
|
PF00244+12-231+14-3-3_protein
|
G3DSA:1.20.190.20:FF:000001+1-241+14-3-3_gamma_1
|
PTHR18860+5-235+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-22;229-251
|
1.000
|
23-228
|
9mmr_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
28443.790
|
4.490
|
-13.000
|
32.669
|
8.367
|
53.386
|
46.614
|
13.944
|
18.725
|
45.418
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
tan
|
3998.856
|
1746.976
|
6320.179
|
6762.099
|
6138.288
|
7166.458
|
4356.150
|
7125.483
|
3310.486
|
156.269
|
1508.076
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.628
|
1.815
|
0.205
|
-0.172
|
0.239
|
-0.709
|
— |
-0.568
|
4.271
|
— |
5.091
|
— | — |
No JSON data available for plots.