SCN Proteipedia

Hg_chrom5_TN10mRNA_11039

Organism: Heterodera glycines Gene Locus: chr5:11807829-11808665 Feature type: polypeptide

Protein Sequence

Length: 117

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.292	0.398	1.243	0.589	0.997	0.438	0.509	2.564	0.76	1.733	1.166	3.519	0.712	0.986	1.047	0.0	0.981	1.166	1.972	0.754	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10403	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	3-Not_Clustered	0.624

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.721	0.324	0.134	0.581	0.069	0.116	0.100	0.071	0.038	0.366

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004236	1.000	2.000	Hsc_gene_11153.t1;Hsc_gene_19471.t1	Hsc_gene_11153.t1;Hsc_gene_19471.t1	—	—	KAI1717759.1 peptidyl-tRNA hydrolase PTH2 domain-containing protein [Ditylenchus destructor]	No	-0.100

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004045	GO:0008150_0.914\|GO:0005575_0.894\|GO:0110165_0.888\|GO:0003674_0.841\|GO:0065007_0.796\|GO:0005622_0.780\|GO:0016020_0.779\|GO:0050789_0.779\|GO:0005737_0.767\|GO:0008152_0.766\|GO:0044238_0.742\|GO:0043226_0.736\|GO:0003824_0.727\|GO:0019538_0.722\|GO:0043170_0.722\|GO:0043229_0.710\|GO:0048519_0.709\|GO:0019222_0.699\|GO:0060255_0.694\|GO:0043227_0.693\|GO:0080090_0.693\|GO:0009056_0.689\|GO:0051246_0.685\|GO:0043231_0.683\|GO:0009892_0.681\|GO:0009057_0.679\|GO:0010605_0.679\|GO:0006508_0.677\|GO:0009894_0.676\|GO:0030163_0.675\|GO:0051248_0.675\|GO:0016787_0.674\|GO:0006511_0.670\|GO:0009895_0.670\|GO:0010498_0.670\|GO:0019941_0.670\|GO:0030162_0.670\|GO:0032434_0.670\|GO:0032435_0.670\|GO:0042176_0.670\|GO:0042177_0.670\|GO:0043161_0.670\|GO:0043632_0.670\|GO:0045861_0.670\|GO:0051603_0.670\|GO:0061136_0.670\|GO:1901799_0.670\|GO:1903050_0.670\|GO:1903051_0.670\|GO:2000058_0.670\|GO:2000059_0.670\|GO:0016788_0.661\|GO:0140098_0.654\|GO:0140640_0.654\|GO:0004045_0.650\|GO:0052689_0.650\|GO:0140101_0.650\|GO:0031090_0.592\|GO:0005739_0.579\|GO:0031967_0.568\|GO:0005740_0.563\|GO:0031966_0.563\|GO:0098588_0.559\|GO:0019867_0.548\|GO:0031968_0.548\|GO:0005741_0.545	IPR002833+6-116+\|IPR023476+5-116_5-117+\|IPR042237+5-117+	—	PF01981+6-116+Peptidyl-tRNA_hydrolase_PTH2	—	PTHR46194+5-117+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-117	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.706	13396.810	7.434	3.000	30.769	12.821	40.171	59.829	17.949	12.821	44.444

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	grey	144.899	136.530	192.292	136.682	114.720	141.271	170.636	271.490	173.870	67.172	112.900

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.265	—	-0.384	-0.286	0.316	0.282	0.838	-0.529	—	—	—	—	—

No JSON data available for plots.

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