Hg_chrom5_TN10mRNA_11040
Organism: Heterodera glycines Gene Locus: chr5:11810233-11814489 Feature type: polypeptideProtein Sequence
Length: 270
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.947 | 1.637 | 0.606 | 0.766 | 0.617 | 1.235 | 0.926 | 1.296 | 0.988 | 1.351 | 0.673 | 1.307 | 1.543 | 0.712 | 0.68 | 1.005 | 1.275 | 1.01 | 0.57 | 1.307 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10404
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.344
|
— | — |
0.065
|
0.042
|
0.007
|
0.153
|
0.244
|
0.731
|
0.260
|
0.015
|
0.844
|
0.333
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004237
|
1.000
|
2.000
|
Hsc_gene_11154.t1;Hsc_gene_19472.t1
|
— | — |
Q11117.1 LAMP family protein lmp-1 [Caenorhabditis elegans]
|
KAH7729072.1 CRE-LMP-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.921|GO:0110165_0.916|GO:0016020_0.874|GO:0005622_0.780|GO:0071944_0.775|GO:0005737_0.762|GO:0005886_0.759|GO:0043226_0.739|GO:0043229_0.725|GO:0043227_0.722|GO:0043231_0.713|GO:0005773_0.709|GO:0000323_0.564|GO:0005764_0.556|GO:0031090_0.555|GO:0012505_0.515|GO:0098588_0.511
|
IPR002000+1-270_37-269+|IPR048524+236-267+
|
— |
PF21222+236-267+Lysosome-associated_membrane_glycoprotein_2,_transmembrane_segment
|
— |
PTHR11506+37-269+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-270
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.829
|
29734.870
|
7.973
|
5.500
|
17.407
|
13.333
|
44.074
|
55.926
|
10.370
|
7.037
|
53.704
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
3600.572
|
17138.823
|
2777.236
|
2608.248
|
2848.434
|
3275.862
|
3740.070
|
3960.174
|
2095.722
|
549.894
|
1212.392
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.855
|
-2.853
|
— |
0.095
|
0.217
|
0.200
|
— | — | — | — |
2.636
|
— | — |
No JSON data available for plots.