Hg_chrom5_TN10mRNA_11044
Organism: Heterodera glycines Gene Locus: chr5:11844247-11846359 Feature type: polypeptideProtein Sequence
Length: 417
(Signal peptide: 1-17)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.558 | 1.338 | 1.221 | 0.248 | 3.317 | 0.43 | 0.571 | 2.518 | 0.426 | 0.681 | 2.471 | 1.27 | 0.6 | 0.646 | 0.93 | 0.822 | 0.472 | 0.654 | 0.553 | 0.423 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10408
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
nucleus
|
KKEQEERKEEEKKKEC,KKWESSDDEETEKQKDK,KKVGETATRGFRNFRRKFL,KGGEKEDEEKKKMNGKNDKKEERMKENEHAKRHGEKKEHHAEKEGKEVKKHEEKEEKEEKKHEVKKEHHAEKDGNPKNEVGLGEEKKHKTKNEFEEEKVHKEKREHEEKKEQEERKEEEKK
|
— | — | — | — |
1-17
|
0.992
|
1.000
|
0.000
|
0.000
|
0.328
|
0.258
|
0.112
|
0.434
|
0.197
|
0.070
|
0.180
|
0.010
|
0.402
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010133
|
1.000
|
1.000
|
Hsc_gene_19474.t1
|
Hsc_gene_19474.t1
|
— | — | — |
MEQ9405624
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
94-417
|
1.000
|
1-93
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.780
|
48799.680
|
5.420
|
-13.500
|
52.518
|
9.353
|
68.585
|
31.415
|
25.899
|
26.619
|
39.089
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1692.475
|
0.313
|
0.878
|
946.203
|
668.799
|
80.673
|
75.065
|
15.678
|
1322.803
|
5742.124
|
3848.129
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
11.457
|
10.186
|
-0.532
|
-3.037
|
— |
-2.475
|
2.404
|
— | — | — | — | — |