Hg_chrom5_TN10mRNA_11052
Organism: Heterodera glycines Gene Locus: chr5:11889014-11892413 Feature type: polypeptideProtein Sequence
Length: 335
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.59 | 1.944 | 0.868 | 0.926 | 0.697 | 0.689 | 0.888 | 1.045 | 1.459 | 1.372 | 1.131 | 1.229 | 2.322 | 0.976 | 0.67 | 0.981 | 0.636 | 0.724 | 1.607 | 0.615 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10416
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_11052
|
22-J4_Male
|
0.978
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
KRRS
|
— | — |
8-31
|
0.950
|
1-20
|
0.974
|
0.994
|
0.000
|
0.000
|
0.140
|
0.358
|
0.140
|
0.263
|
0.205
|
0.094
|
0.254
|
0.057
|
0.193
|
0.876
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002269
|
1.000
|
3.000
|
Hsc_gene_11150.t1;Hsc_gene_11150.t2;Hsc_gene_19480.t1
|
Hsc_gene_19480.t1
|
— |
P80010.1 Plasminogen [Equus caballus]
|
WP_281545003.1 serine protease [Grimontia sp. SpTr1]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.788|GO:0005575_0.752|GO:0110165_0.752|GO:0016020_0.554|GO:0003674_0.550|GO:0009987_0.504
|
IPR001254+229-335_231-334+|IPR009003+227-334+|IPR043504+215-335+|IPR051333+130-334+
|
— |
PF00089+231-334+Trypsin
|
— |
PTHR24260+130-334+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-335
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
37836.640
|
8.559
|
9.500
|
21.791
|
14.627
|
43.582
|
56.418
|
12.836
|
8.955
|
48.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
43.250
|
21.998
|
1.605
|
0.367
|
3.372
|
210.740
|
2.841
|
263.663
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-4.000
|
-6.035
|
— |
3.149
|
6.006
|
-6.206
|
— |
-6.396
|
— | — | — | — | — |