Hg_chrom5_TN10mRNA_11054
Organism: Heterodera glycines Gene Locus: chr5:11898947-11905877 Feature type: polypeptideProtein Sequence
Length: 957
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.729 | 1.166 | 0.95 | 0.757 | 0.923 | 0.777 | 0.535 | 1.149 | 1.765 | 1.257 | 0.697 | 2.028 | 1.887 | 0.703 | 0.938 | 1.12 | 1.079 | 1.061 | 0.804 | 0.922 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10418
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_11054
|
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— |
KRKR,RKRK,RKEDLSDLLQRYIRR
|
39-59
|
0.995
|
— | — | — | — |
0.000
|
— | — |
0.117
|
0.100
|
0.010
|
0.091
|
0.425
|
0.684
|
0.574
|
0.012
|
0.608
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002253
|
3.000
|
1.000
|
Hsc_gene_13988.t1
|
— | — |
Q9VRC9.2 NPC intracellular cholesterol transporter 1 homolog 1b [Drosophila melanogaster]
|
KAF7638765.1 SSD domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.886|GO:0110165_0.885|GO:0071944_0.835|GO:0016020_0.831|GO:0005886_0.819|GO:0008150_0.769|GO:0009987_0.620|GO:0005622_0.551|GO:0006810_0.544|GO:0051179_0.544|GO:0051234_0.544|GO:0005737_0.506|GO:0043226_0.502
|
IPR000731+332-478+|IPR003392+74-945+|IPR051697+34-947+
|
— |
PF02460+74-945+Patched_family
|
— |
PTHR10796+34-947+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-957
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.542
|
108487.230
|
6.213
|
-4.000
|
22.257
|
13.271
|
44.723
|
55.277
|
11.494
|
10.763
|
48.276
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
4184.429
|
291.217
|
2000.147
|
5614.948
|
19905.116
|
7084.118
|
4127.091
|
4578.329
|
185.543
|
1817.358
|
1118.009
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.552
|
4.132
|
1.596
|
1.794
|
-1.475
|
-0.772
|
-0.722
|
— |
-3.392
|
5.028
|
3.612
|
— | — |
No JSON data available for plots.