Hg_chrom5_TN10mRNA_11056
Organism: Heterodera glycines Gene Locus: chr5:11922657-11927653 Feature type: polypeptideProtein Sequence
Length: 694
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.503 | 0.335 | 0.891 | 0.497 | 0.528 | 0.85 | 3.517 | 0.504 | 0.736 | 0.818 | 0.764 | 0.509 | 0.64 | 3.658 | 0.735 | 0.329 | 0.614 | 0.48 | 0.222 | 0.339 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10420
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.702
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
APGMKGEKGLPGPAGPRGKEGRSGLPG
|
— | — | — | — | — | — |
0.010
|
— | — |
0.125
|
0.045
|
0.017
|
0.237
|
0.174
|
0.109
|
0.114
|
0.004
|
0.124
|
0.767
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002956
|
3.000
|
0.000
|
0.000
|
— | — |
P27393.1 Collagen alpha-2(IV) chain [Ascaris suum]
|
KAF7635967.1 Collagen IV NC1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0003674_0.922|GO:0008150_0.921|GO:0005575_0.913|GO:0110165_0.913|GO:0030312_0.855|GO:0071944_0.855|GO:0009987_0.835|GO:0032501_0.806|GO:0032502_0.805|GO:0048856_0.805|GO:0065007_0.801|GO:0007275_0.783|GO:0050789_0.777|GO:0048731_0.768|GO:0050794_0.761|GO:0048513_0.726|GO:0009653_0.709|GO:0051179_0.702|GO:0031012_0.699|GO:0062023_0.699|GO:0009790_0.689|GO:0003006_0.688|GO:0022414_0.688|GO:0048608_0.688|GO:0061458_0.688|GO:0009887_0.683|GO:0016477_0.683|GO:0048870_0.683|GO:0009792_0.680|GO:0051641_0.680|GO:0033036_0.678|GO:0007548_0.677|GO:0008406_0.677|GO:0045137_0.677|GO:0030334_0.676|GO:0040011_0.676|GO:0040012_0.676|GO:0070727_0.676|GO:2000145_0.676|GO:0008104_0.675|GO:0035262_0.670|GO:0097628_0.670|GO:1903354_0.670|GO:0005198_0.665|GO:0005201_0.650|GO:0030020_0.650|GO:0032991_0.581|GO:0099080_0.557|GO:0099081_0.548|GO:0005581_0.540|GO:0005587_0.540|GO:0005604_0.540|GO:0098642_0.540|GO:0098644_0.540|GO:0098645_0.540|GO:0098651_0.540
|
IPR008160+80-137_314-371_338-395_401-454_438-489_583-642_649-689+|IPR050149+197-689+
|
— |
PF01391+80-137_314-371_338-395_401-454_438-489_583-642_649-689+Collagen_triple_helix_repeat_(20_copies)
|
— |
PTHR24023+197-689+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
73-694
|
1.000
|
1-72
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.802
|
66267.250
|
8.164
|
7.500
|
17.723
|
4.755
|
28.530
|
71.470
|
9.654
|
8.069
|
69.885
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
538.249
|
201.088
|
347.742
|
592.255
|
529.397
|
2172.014
|
212.096
|
863.925
|
1.896
|
508.971
|
291.653
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.563
|
1.421
|
0.875
|
-0.194
|
2.053
|
-3.349
|
-1.442
|
-1.883
|
-8.204
|
8.592
|
— | — | — |
No JSON data available for plots.