Hg_chrom5_TN10mRNA_11057
Organism: Heterodera glycines Gene Locus: chr5:11929790-11940162 Feature type: polypeptideProtein Sequence
Length: 1,048
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 0.555 | 0.642 | 0.428 | 0.811 | 1.272 | 3.328 | 0.477 | 0.573 | 0.941 | 0.622 | 0.954 | 0.981 | 3.175 | 0.487 | 0.613 | 0.438 | 0.448 | 0.44 | 0.421 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10421
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.382
|
0.083
|
0.013
|
0.461
|
0.086
|
0.093
|
0.038
|
0.012
|
0.127
|
0.831
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004238
|
1.000
|
2.000
|
Hsc_gene_20861.t1;Hsc_gene_8525.t1
|
Hsc_gene_8525.t1
|
— |
P17140.2 Collagen alpha-2(IV) chain [Caenorhabditis elegans]
|
AAA27989.1 alpha-2 type IV collagen, partial [Caenorhabditis elegans]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005201|GO:0005581
|
GO:0005575_0.914|GO:0110165_0.903|GO:0008150_0.798|GO:0030312_0.757|GO:0071944_0.757|GO:0003674_0.725|GO:0009987_0.723|GO:0031012_0.642|GO:0062023_0.642|GO:0032502_0.577|GO:0048856_0.577|GO:0032501_0.572|GO:0007275_0.550|GO:0048731_0.532|GO:0065007_0.507|GO:0050789_0.502
|
IPR001442+824-931_824-1047_826-929_932-1046_934-1044+|IPR008160+6-67_57-107_224-274_254-311_457-507_499-556_564-621_618-675_669-727_734-785_764-819+|IPR016187+827-932_933-1046+|IPR036954+821-1048+|IPR050149+326-1015+
|
SM00111+824-931_932-1046+
|
PF01391+6-67_57-107_224-274_254-311_457-507_499-556_564-621_618-675_669-727_734-785_764-819+Collagen_triple_helix_repeat_(20_copies)|PF01413+826-929_934-1044+C-terminal_tandem_repeated_domain_in_type_4_procollagen
|
G3DSA:2.170.240.10:FF:000001+821-1047+Collagen_IV_alpha_1_chain
|
PTHR24023+326-1015+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-838
|
1.000
|
839-1048
|
1t61_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.922
|
101742.300
|
4.906
|
-15.000
|
15.840
|
6.489
|
30.153
|
69.847
|
7.443
|
8.397
|
66.031
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
1810.700
|
647.364
|
811.232
|
1558.430
|
1267.487
|
5590.978
|
829.068
|
3710.907
|
427.665
|
2195.262
|
1437.721
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.130
|
1.050
|
-0.331
|
2.157
|
-2.744
|
-0.703
|
-2.017
|
-2.466
|
— | — | — | — |
No JSON data available for plots.