Hg_chrom5_TN10mRNA_11061
Organism: Heterodera glycines Gene Locus: chr5:11953427-11955686 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.779 | 0.206 | 0.977 | 0.378 | 0.291 | 0.607 | 1.416 | 2.392 | 1.684 | 0.601 | 1.333 | 2.125 | 0.708 | 0.578 | 1.093 | 1.022 | 1.288 | 0.654 | 1.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10425
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKSASNNSNAEKFNRRIFR
|
55-75
|
0.864
|
— | — | — | — |
0.000
|
— | — |
0.122
|
0.076
|
0.037
|
0.099
|
0.366
|
0.165
|
0.158
|
0.021
|
0.873
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004240
|
2.000
|
1.000
|
Hsc_gene_8530.t1
|
— | — | — |
KAI1698440.1 serpentine type 7TM GPCR chemoreceptor srsx domain-containing protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0007186|GO:0016020
|
— |
IPR000276+40-306+|IPR019424+41-304+|IPR047130+30-310+
|
SM01381+40-306+
|
PF10320+41-304+Serpentine_type_7TM_GPCR_chemoreceptor_Srsx
|
— |
PTHR23360+30-310+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-353
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
39227.610
|
9.345
|
17.000
|
13.031
|
14.731
|
35.694
|
64.306
|
9.632
|
3.399
|
49.575
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
8.788
|
4.311
|
25.295
|
8.467
|
7.611
|
7.021
|
6.889
|
16.817
|
0.000
|
9.793
|
5.596
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.324
|
— |
-1.466
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.