Hg_chrom5_TN10mRNA_11068
Organism: Heterodera glycines Gene Locus: chr5:11972683-11976314 Feature type: polypeptideProtein Sequence
Length: 464
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.752 | 1.804 | 0.705 | 0.446 | 0.826 | 1.216 | 0.718 | 1.078 | 1.293 | 1.252 | 0.653 | 1.268 | 1.916 | 0.829 | 0.924 | 0.8 | 1.06 | 1.176 | 1.16 | 1.204 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10431
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
— |
47-67
|
0.995
|
39-72
|
0.982
|
1-27
|
0.980
|
1.000
|
0.000
|
0.000
|
0.254
|
0.218
|
0.017
|
0.430
|
0.365
|
0.482
|
0.243
|
0.057
|
0.274
|
0.694
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010143
|
1.000
|
1.000
|
Hsc_gene_8536.t1
|
Hsc_gene_8535.t1;Hsc_gene_8536.t1
|
— | — |
KAI1703529.1 FAD binding domain-containing protein [Ditylenchus destructor]
|
MBF89023
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003885|GO:0016020|GO:0016899|GO:0050660|GO:0071949
|
GO:0008150_0.850|GO:0003674_0.710|GO:0008152_0.658|GO:0009987_0.614|GO:0003824_0.607|GO:0005575_0.567|GO:0110165_0.567|GO:0044281_0.515|GO:0044238_0.510|GO:0044237_0.506|GO:0016491_0.505
|
IPR006094+62-190+|IPR007173+330-458+|IPR010031+41-287_46-461_392-464+|IPR016166+56-220+|IPR016167+41-108+|IPR016169+110-235+|IPR016171+427-460+|IPR036318+45-219+
|
— |
PF01565+62-190+FAD_binding_domain|PF04030+330-458+D-arabinono-1,4-lactone_oxidase
|
— |
PTHR43762+46-461+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-464
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.742
|
52704.220
|
7.453
|
5.000
|
19.828
|
14.655
|
44.397
|
55.603
|
10.991
|
8.836
|
49.569
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
skyblue
|
302.636
|
1.350
|
5.574
|
8.146
|
97.626
|
1011.923
|
1244.634
|
937.357
|
0.000
|
84.052
|
48.030
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.446
|
— |
3.554
|
3.387
|
0.307
|
— | — | — | — | — | — | — |