Hg_chrom5_TN10mRNA_11078
Organism: Heterodera glycines Gene Locus: chr5:12052324-12075731 Feature type: polypeptideProtein Sequence
Length: 1,750
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.063 | 1.329 | 1.081 | 0.276 | 1.219 | 1.377 | 0.558 | 1.286 | 1.219 | 1.251 | 0.771 | 0.84 | 1.111 | 0.725 | 1.213 | 1.053 | 1.274 | 1.004 | 0.308 | 0.387 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10439
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_11078
|
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
mitochondria
|
KRIR
|
36-77
|
0.976
|
— | — |
1-21
|
0.997
|
1.000
|
0.000
|
0.000
|
0.119
|
0.082
|
0.022
|
0.406
|
0.083
|
0.092
|
0.147
|
0.063
|
0.262
|
0.837
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001344
|
3.000
|
2.000
|
Hsc_gene_8542.t1;Hsc_gene_8542.t2
|
Hsc_gene_8542.t1;Hsc_gene_8542.t2
|
— |
A6NMZ7.2 Collagen alpha-6(VI) chain [Homo sapiens]
|
KAI1717984.1 von willebrand factor type A domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.933|GO:0110165_0.930|GO:0071944_0.772|GO:0008150_0.571
|
IPR002035+40-225_42-224_307-478_309-457_309-491_661-836_663-842_664-824_1277-1450_1279-1439_1279-1453_1505-1681_1507-1674_1507-1683+|IPR036465+37-230_43-227_295-457_296-471_651-842_660-829_914-1050_1273-1449_1275-1442_1494-1716_1501-1679+|IPR052229+1212-1432+
|
SM00327+40-225_307-478_661-836_1277-1450_1505-1681+
|
PF00092+309-457_664-824_1279-1439_1507-1674+von_Willebrand_factor_type_A_domain
|
— |
PTHR22588+1212-1432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
248-292;528-667;1089-1265;1710-1750
|
4.000
|
1-247;293-527;668-1088;1266-1709
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.512
|
194012.140
|
5.897
|
-16.500
|
26.857
|
8.286
|
53.086
|
46.914
|
13.600
|
13.257
|
51.829
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
2560.726
|
508.540
|
232.967
|
577.925
|
4329.063
|
16842.335
|
677.714
|
1897.086
|
101.453
|
1727.477
|
1030.610
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.356
|
— |
1.420
|
2.874
|
1.976
|
-4.628
|
-3.271
|
-1.338
|
-4.199
|
— | — | — | — |