Hg_chrom5_TN10mRNA_11080
Organism: Heterodera glycines Gene Locus: chr5:12076558-12083184 Feature type: polypeptideProtein Sequence
Length: 855
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 1.278 | 1.276 | 0.282 | 0.916 | 1.35 | 0.654 | 1.228 | 1.481 | 1.17 | 0.638 | 1.17 | 1.007 | 0.697 | 1.599 | 1.153 | 1.208 | 0.975 | 0.18 | 0.413 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10439
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — |
Hg_chrom5_TN10mRNA_11080
|
26-J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
PGVKRRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.214
|
0.179
|
0.032
|
0.353
|
0.136
|
0.092
|
0.132
|
0.047
|
0.201
|
0.876
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010148
|
1.000
|
1.000
|
Hsc_gene_8543.t1
|
Hsc_gene_8542.t1;Hsc_gene_8542.t2;Hsc_gene_8543.t1
|
— | — |
KAH7723672.1 von Willebrand factor domain-containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.912|GO:0110165_0.896|GO:0071944_0.714|GO:0008150_0.589|GO:0030312_0.555|GO:0031012_0.540
|
IPR002035+50-223_52-199_52-225_286-463_288-464_343-440_672-849_674-844_674-852+|IPR036465+40-225_46-205_282-466_285-451_659-846_673-853+|IPR050525+561-841+
|
SM00327+50-223_286-463_672-849+
|
PF00092+52-199_674-844+von_Willebrand_factor_type_A_domain|PF13768+343-440+von_Willebrand_factor_type_A_domain
|
— |
PTHR24020+561-841+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
531-657
|
2.000
|
1-530;658-855
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.682
|
95033.100
|
7.070
|
6.500
|
27.018
|
7.719
|
53.216
|
46.784
|
14.503
|
12.515
|
52.164
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
2560.726
|
508.540
|
232.967
|
577.925
|
4329.063
|
16842.335
|
677.714
|
1897.086
|
101.453
|
1727.477
|
1030.610
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.356
|
— |
1.420
|
2.874
|
1.976
|
-4.628
|
-3.271
|
-1.338
|
-4.199
|
— | — | — | — |
No JSON data available for plots.