Hg_chrom5_TN10mRNA_11088
Organism: Heterodera glycines Gene Locus: chr5:12105767-12106785 Feature type: polypeptideProtein Sequence
Length: 188
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.113 | 1.608 | 0.774 | 0.0 | 1.33 | 1.227 | 0.633 | 1.862 | 1.064 | 1.725 | 0.887 | 1.877 | 1.921 | 0.409 | 0.868 | 0.912 | 0.61 | 0.564 | 1.227 | 0.626 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10447
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_11088
|
18-Not_Clustered
|
0.827
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus|mitochondrion
|
— | — | — | — | — | — |
1-22
|
0.842
|
0.998
|
0.000
|
0.000
|
0.699
|
0.767
|
0.033
|
0.593
|
0.232
|
0.104
|
0.472
|
0.561
|
0.065
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004242
|
1.000
|
2.000
|
Hsc_gene_8551.t1;Hsc_gene_8551.t2
|
Hsc_gene_8551.t1;Hsc_gene_8551.t2
|
— |
Q45697.3 Uric acid degradation bifunctional protein [Bacillus sp. TB-90]
|
HEX8597636.1 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase [Chloroflexia bacterium]
|
MBT5047860
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000255
|
GO:0003674_0.812|GO:0003824_0.708|GO:0016829_0.655|GO:0016830_0.650|GO:0016831_0.650|GO:0051997_0.650|GO:0005575_0.644|GO:0110165_0.644|GO:0008150_0.613|GO:0016020_0.578|GO:0005622_0.568|GO:0009987_0.555|GO:0005737_0.536|GO:0043226_0.516|GO:0043229_0.516
|
IPR017580+32-152+|IPR018020+29-154+|IPR036778+23-174_25-150+
|
— |
PF09349+29-154+OHCU_decarboxylase
|
— |
PTHR43466+23-150+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
2o8i_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.500
|
21462.450
|
6.383
|
-0.500
|
26.064
|
14.362
|
47.872
|
52.128
|
13.830
|
12.234
|
42.021
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1209.966
|
125.750
|
721.848
|
373.427
|
436.013
|
568.371
|
399.788
|
831.953
|
397.742
|
3698.861
|
2284.096
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.294
|
1.434
|
-0.843
|
0.191
|
0.397
|
-0.498
|
0.446
|
-0.915
|
— | — | — | — | — |