Hg_chrom5_TN10mRNA_11091
Organism: Heterodera glycines Gene Locus: chr5:12112525-12116352 Feature type: polypeptideProtein Sequence
Length: 362
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.221 | 1.205 | 0.191 | 0.875 | 0.779 | 0.493 | 2.072 | 1.166 | 1.232 | 1.214 | 1.787 | 1.688 | 0.797 | 0.677 | 0.987 | 0.996 | 1.214 | 1.7 | 0.731 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10450
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
Hg_chrom5_TN10mRNA_11091
|
15-Not_Clustered
|
0.736
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — |
19-40
|
0.871
|
— | — | — | — |
0.000
|
— | — |
0.178
|
0.092
|
0.005
|
0.245
|
0.459
|
0.307
|
0.293
|
0.002
|
0.077
|
0.637
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010155
|
1.000
|
1.000
|
Hsc_gene_8553.t1
|
Hsc_gene_8553.t1
|
— |
Q9GUC9.2 Uncharacterized protein F14F9.5 [Caenorhabditis elegans]
|
KAH7723950.1 Protein F14F9.5 [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
— |
IPR005135+67-348+|IPR036691+57-358_59-356+
|
— |
PF03372+67-348+Endonuclease/Exonuclease/phosphatase_family
|
— |
PTHR41349+42-359+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-362
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.596
|
41412.480
|
7.213
|
5.500
|
27.348
|
14.917
|
48.619
|
51.381
|
15.470
|
11.878
|
48.066
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
279.554
|
2.296
|
72.825
|
44.544
|
46.912
|
275.938
|
115.549
|
700.344
|
222.746
|
584.087
|
429.227
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.758
|
4.141
|
-0.601
|
— |
2.572
|
-1.248
|
1.244
|
-2.462
|
— | — | — | — | — |
No JSON data available for plots.