Hg_chrom5_TN10mRNA_11093
Organism: Heterodera glycines Gene Locus: chr5:12120189-12125750 Feature type: polypeptideProtein Sequence
Length: 678
(Signal peptide: 1-21)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.132 | 1.372 | 1.099 | 0.407 | 0.762 | 0.794 | 0.79 | 1.917 | 1.18 | 1.017 | 1.028 | 2.169 | 1.065 | 1.106 | 0.903 | 0.927 | 0.846 | 0.872 | 0.794 | 0.954 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10452
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_8555
|
Hg_chrom5_TN10mRNA_11093
|
21-Not_Clustered
|
0.763
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRKR,AAAED
|
— | — | — | — |
1-21
|
0.970
|
1.000
|
0.000
|
0.000
|
0.738
|
0.124
|
0.053
|
0.312
|
0.301
|
0.311
|
0.123
|
0.038
|
0.135
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010157
|
1.000
|
1.000
|
Hsc_gene_8555.t1
|
Hsc_gene_8555.t1
|
— |
P0DPU3.1 Scoloptoxin SSD14 [Scolopendra dehaani]
|
AAN32885.1 glutamyl transpeptidedase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006751|GO:0036374
|
GO:0005575_0.845|GO:0110165_0.845|GO:0008150_0.757|GO:0016020_0.684|GO:0003674_0.666|GO:0009987_0.623|GO:0008152_0.551|GO:0003824_0.537
|
IPR000101+30-669+|IPR029055+114-670+|IPR043137+480-678+|IPR043138+361-473+
|
— |
PF01019+136-670+Gamma-glutamyltranspeptidase
|
G3DSA:1.10.246.130:FF:000005+358-474+Gamma-glutamyltranspeptidase_1,_putative|G3DSA:3.60.20.40:FF:000006+479-678+Protein_CBG05566
|
PTHR11686+30-669+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
355-415
|
2.000
|
1-354;416-678
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.803
|
75093.550
|
8.294
|
17.000
|
25.664
|
11.947
|
46.313
|
53.687
|
15.044
|
10.619
|
52.655
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
3662.193
|
14.143
|
58.216
|
2555.574
|
2452.472
|
385.882
|
544.821
|
256.342
|
925.981
|
12977.315
|
7812.457
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.813
|
7.359
|
5.562
|
— |
-2.654
|
0.508
|
-0.708
|
1.235
|
-3.910
|
— | — | — | — |