Hg_chrom5_TN10mRNA_11095
Organism: Heterodera glycines Gene Locus: chr5:12138415-12142477 Feature type: polypeptideProtein Sequence
Length: 516
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.059 | 0.631 | 1.233 | 0.0 | 0.937 | 1.093 | 0.692 | 0.484 | 0.991 | 1.074 | 1.321 | 1.71 | 0.969 | 1.416 | 1.345 | 0.581 | 1.303 | 1.175 | 0.745 | 0.741 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10454
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
G23G11|AF500032.1#tn8canujg14864.t1
|
G23G11|AF5000321#tn8canujg14864t1
|
Hsc_gene_8557
|
— |
Hg_chrom5_TN10mRNA_11095
|
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
chloroplast
|
RPRR,KRLGLVDDTLKDMYKKLPR
|
— | — |
32-73
|
0.993
|
1-27
|
0.957
|
1.000
|
0.000
|
0.000
|
0.318
|
0.265
|
0.043
|
0.405
|
0.124
|
0.228
|
0.105
|
0.026
|
0.211
|
0.468
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010159
|
1.000
|
1.000
|
Hsc_gene_8557.t1
|
Hsc_gene_8557.t1
|
— | — |
AAP30771.1 putative gland protein G23G11 [Heterodera glycines]
|
MCI5501501
|
0.490
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
75-123
|
2.000
|
1-74;124-516
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.793
|
57564.280
|
10.095
|
17.500
|
28.682
|
7.946
|
47.674
|
52.326
|
16.279
|
12.403
|
51.550
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
1915.125
|
110.296
|
162.083
|
1722.498
|
1729.678
|
285.775
|
379.054
|
139.876
|
1390.380
|
5637.413
|
3817.256
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.324
|
3.828
|
3.519
|
— |
-2.583
|
0.419
|
-1.144
|
1.584
|
— | — | — | — | — |