Hg_chrom5_TN10mRNA_11097
Organism: Heterodera glycines Gene Locus: chr5:12145303-12146709 Feature type: polypeptideProtein Sequence
Length: 106
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.878 | 1.097 | 0.858 | 0.325 | 0.943 | 0.484 | 1.011 | 0.472 | 1.468 | 1.53 | 1.001 | 2.22 | 1.31 | 0.907 | 0.963 | 1.213 | 0.928 | 0.286 | 2.177 | 1.11 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10456
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.946
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRIPTFPFEKRLSK,KKSYGGVNGAFMALRKRIP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.750
|
0.301
|
0.002
|
0.445
|
0.079
|
0.036
|
0.182
|
0.005
|
0.080
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010161
|
1.000
|
1.000
|
Hsc_gene_8559.t1
|
Hsc_gene_8559.t1
|
— |
Q20561.1 Helix-loop-helix protein 13 [Caenorhabditis elegans]
|
KAI1732197.1 helix-loop-helix DNA-binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046983
|
GO:0008150_0.867|GO:0005575_0.715|GO:0110165_0.702|GO:0009987_0.668|GO:0005622_0.629|GO:0032501_0.626|GO:0003674_0.619|GO:0016020_0.608|GO:0005488_0.598|GO:0065007_0.594|GO:0032502_0.592|GO:0050789_0.586|GO:0043226_0.583|GO:0043229_0.568|GO:0050794_0.567|GO:0048856_0.566|GO:0043227_0.534|GO:0043231_0.532|GO:0007275_0.528
|
IPR011598+1-46_1-52_10-46+|IPR036638+5-57_9-64+|IPR050283+10-62+
|
SM00353+1-52+
|
PF00010+10-46+Helix-loop-helix_DNA-binding_domain
|
— |
PTHR23349+10-62+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
106-106
|
1.000
|
1-105
|
2ypb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.857
|
11891.670
|
7.989
|
1.500
|
22.642
|
12.264
|
43.396
|
56.604
|
12.264
|
10.377
|
47.170
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
203.113
|
26.507
|
38.827
|
16.738
|
3.710
|
2.012
|
1.619
|
48.776
|
143.234
|
729.373
|
478.171
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.801
|
-1.105
|
-2.216
|
— | — |
4.507
|
-4.775
|
— | — |
-7.356
|
— | — |
No JSON data available for plots.