Hg_chrom5_TN10mRNA_11101
Organism: Heterodera glycines Gene Locus: chr5:12162019-12165052 Feature type: polypeptideProtein Sequence
Length: 195
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.014 | 1.312 | 1.026 | 0.177 | 1.111 | 1.052 | 0.794 | 1.282 | 1.026 | 0.347 | 1.943 | 0.603 | 0.997 | 0.296 | 0.837 | 1.172 | 1.597 | 0.932 | 1.183 | 1.056 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10460
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.465
|
0.273
|
0.032
|
0.694
|
0.144
|
0.063
|
0.137
|
0.003
|
0.410
|
0.131
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010165
|
1.000
|
1.000
|
Hsc_gene_8563.t1
|
Hsc_gene_8563.t1
|
— |
P91127.1 Tubulin polymerization-promoting protein homolog [Caenorhabditis elegans]
|
KAI1731509.1 p25-alpha domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015631|GO:0046785
|
GO:0008150_0.899|GO:0009987_0.755|GO:0005575_0.725|GO:0110165_0.716|GO:0065007_0.609|GO:0005622_0.603|GO:0050789_0.597|GO:0050794_0.588|GO:0016020_0.541|GO:0005737_0.527|GO:0007017_0.526|GO:0071840_0.508
|
IPR008907+21-193_25-184+|IPR011992+21-157+
|
— |
PF05517+25-184+p25-alpha
|
— |
PTHR12932+21-193+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;132-195
|
1.000
|
2-131
|
1pul_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
21808.300
|
10.044
|
11.500
|
31.795
|
11.282
|
59.487
|
40.513
|
19.487
|
12.308
|
52.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
436.776
|
517.887
|
1035.257
|
334.538
|
118.196
|
96.710
|
57.572
|
460.301
|
230.956
|
755.007
|
530.414
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.771
|
-0.767
|
-1.522
|
-1.534
|
— |
-0.739
|
2.149
|
-2.859
|
— | — | — | — | — |
No JSON data available for plots.