SCN Proteipedia

Hg_chrom5_TN10mRNA_11102

Organism: Heterodera glycines Gene Locus: chr5:12165521-12173179 Feature type: polypeptide

Protein Sequence

Length: 565

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.638	1.317	1.191	0.183	1.711	1.634	0.421	0.885	1.062	1.363	1.26	2.395	1.032	0.477	1.517	0.683	0.841	0.697	0.817	0.989	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10461	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	27-ppJ2_pJ2_J3_J4_Female_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KKAQDFVFYAPRLRINKR,KRILALCMGNHELYMRRRK	—	—	—	—	—	—	0.000	—	—	0.449	0.142	0.014	0.626	0.122	0.200	0.271	0.006	0.399	0.034

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0010166	1.000	1.000	Hsc_gene_8564.t1	Hsc_gene_8564.t1	—	P46150.2 Moesin/ezrin/radixin homolog 1 [Drosophila melanogaster]	KAF7636184.1 FERM domain-containing protein [Meloidogyne graminicola]	No	-0.100

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003779\|GO:0005856\|GO:0008092	GO:0008150_0.887\|GO:0005575_0.883\|GO:0110165_0.877\|GO:0005622_0.842\|GO:0009987_0.796\|GO:0016020_0.759\|GO:0043226_0.744\|GO:0065007_0.700\|GO:0043229_0.687\|GO:0050789_0.676\|GO:0071944_0.672\|GO:0005886_0.669\|GO:0050794_0.648\|GO:0005737_0.643\|GO:0003674_0.642\|GO:0071840_0.635\|GO:0016043_0.628\|GO:0005488_0.612\|GO:0005515_0.596\|GO:0043228_0.567\|GO:0043232_0.567\|GO:0048518_0.548\|GO:0032502_0.540\|GO:0048522_0.536\|GO:0043227_0.523\|GO:0051179_0.518\|GO:0005856_0.513\|GO:0098590_0.503	IPR000299+6-296+\|IPR000798+18-37_70-89_114-135_160-177_210-230_285-304_520-541_542-563+\|IPR008954+483-565_484-565+\|IPR011174+1-565_3-565+\|IPR011259+491-565+\|IPR011993+202-297+\|IPR014352+84-200+\|IPR018979+14-70+\|IPR018980+211-299_211-300+\|IPR019747+59-89_177-206+\|IPR019748+91-207_99-199+\|IPR019749+2-207_38-50_105-118_118-138_187-203+\|IPR029071+3-88+\|IPR035963+90-199+\|IPR041789+201-297+\|IPR046810+331-445+	SM00295+2-207+\|SM01196+211-300+	PF00373+91-207+FERM_central_domain\|PF00769+491-565+Ezrin/radixin/moesin_family_C_terminal\|PF09379+14-70+FERM_N-terminal_domain\|PF09380+211-299+FERM_C-terminal_PH-like_domain\|PF20492+331-445+Ezrin/radixin/moesin,_alpha-helical_domain	G3DSA:1.20.80.10:FF:000002+84-200+radixin_isoform_X1\|G3DSA:2.30.29.30:FF:000003+202-297+Radixin_isoform_1\|G3DSA:3.10.20.90:FF:000013+5-83+radixin_isoform_X1	PTHR23281+3-565+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	298-565	1.000	1-297	1e5w_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.590	66689.780	6.382	-1.000	34.336	9.912	56.283	43.717	17.522	16.814	38.761

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	lightyellow	grey	3601.206	1069.329	2658.668	2299.258	2886.358	4037.551	3698.557	5020.389	2725.191	5585.091	4359.419

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.086	0.968	—	0.296	0.499	—	—	—	—	—	—	—	—

No JSON data available for plots.

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