Hg_chrom5_TN10mRNA_11103
Organism: Heterodera glycines Gene Locus: chr5:12174503-12179870 Feature type: polypeptideProtein Sequence
Length: 268
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.738 | 1.215 | 0.678 | 1.158 | 1.057 | 0.957 | 0.622 | 0.373 | 1.907 | 1.462 | 0.622 | 1.756 | 1.555 | 0.502 | 0.914 | 1.066 | 1.101 | 0.735 | 2.296 | 1.207 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10462
|
— | — |
1.667
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KKKK
|
27-77
|
0.883
|
— | — | — | — |
0.000
|
— | — |
0.088
|
0.102
|
0.016
|
0.236
|
0.443
|
0.241
|
0.131
|
0.004
|
0.517
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004243
|
1.000
|
2.000
|
Hsc_gene_11566.t1;Hsc_gene_11566.t2
|
Hsc_gene_11566.t1;Hsc_gene_11566.t2
|
— |
C9D7C2.1 Voltage-dependent calcium channel type A subunit alpha-1 [Apis mellifera]
|
QRX85587.1 voltage-dependent calcium channel non-L type alpha-1 [Heterodera elachista]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005216|GO:0006811|GO:0016020|GO:0055085
|
GO:0008150_0.953|GO:0005575_0.876|GO:0110165_0.876|GO:0009987_0.861|GO:0071944_0.835|GO:0016020_0.829|GO:0003674_0.827|GO:0005886_0.827|GO:0006810_0.827|GO:0051179_0.827|GO:0051234_0.827|GO:0055085_0.736|GO:0006811_0.727|GO:0006812_0.707|GO:0030001_0.702|GO:0034220_0.693|GO:0098660_0.687|GO:0005215_0.684|GO:0022857_0.684|GO:0006816_0.676|GO:0098655_0.675|GO:0098662_0.673|GO:0015075_0.656|GO:0008324_0.648|GO:0015267_0.648|GO:0022803_0.648|GO:0015318_0.647|GO:0070588_0.645|GO:0005216_0.643|GO:0022890_0.642|GO:0046873_0.638|GO:0022836_0.634|GO:0005261_0.631|GO:0005244_0.625|GO:0022832_0.625|GO:0022843_0.625|GO:0005245_0.620|GO:0005262_0.620|GO:0015085_0.620|GO:0065007_0.616|GO:0050789_0.588|GO:0050896_0.526|GO:0023052_0.525|GO:0007154_0.520
|
IPR005821+40-182+|IPR050599+81-233+
|
— |
PF00520+40-182+Ion_transport_protein
|
G3DSA:1.10.287.70:FF:000007+90-177+Voltage-dependent_L-type_calcium_channel_subunit_alpha
|
PTHR45628+81-233+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-268
|
8epm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.528
|
30692.500
|
5.118
|
-3.000
|
19.403
|
13.433
|
42.537
|
57.463
|
9.328
|
10.075
|
45.522
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
130.937
|
67.932
|
176.994
|
116.140
|
85.201
|
116.935
|
53.902
|
88.122
|
46.200
|
273.738
|
176.222
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.151
|
0.636
|
-0.499
|
-0.480
|
0.473
|
-1.111
|
-0.514
|
-0.570
|
— | — | — | — | — |
No JSON data available for plots.