SCN Proteipedia

Hg_chrom5_TN10mRNA_11104

Organism: Heterodera glycines Gene Locus: chr5:12182553-12191299 Feature type: polypeptide

Protein Sequence

Length: 1,072

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.835	0.976	1.085	1.673	1.011	1.22	0.711	1.026	0.871	0.857	0.82	0.988	1.399	0.843	1.523	1.386	1.132	0.749	1.363	0.412	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10463	—	—	1.444	1.000	2.000	1.000	1.000	2.000	1.000	2.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.724

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	RRKR,RKRG	—	—	—	—	—	—	0.000	—	—	0.456	0.131	0.039	0.276	0.196	0.061	0.064	0.029	0.242	0.221

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004244	2.000	1.000	Hsc_gene_24197.t1	Hsc_gene_10771.t1;Hsc_gene_141.t2;Hsc_gene_24197.t1	—	Q9Z1P5.1 CD320 antigen [Mus musculus]	KAI1722629.1 RNA polymerase III subunit rpc25 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0005524\|GO:0006351\|GO:0016020	GO:0005575_0.862\|GO:0008150_0.804\|GO:0110165_0.753\|GO:0009987_0.702\|GO:0016020_0.636\|GO:0005622_0.563\|GO:0003674_0.534\|GO:0043226_0.526	IPR002172+213-250_214-251_214-252_215-250_226-247_256-349_317-350_324-345_324-348_325-348_356-392_356-393_356-394_360-392_368-389_396-422_409-430_417-455_417-456_420-454_423-454_458-492_458-495_458-496_459-493_470-491+\|IPR005576+8-63+\|IPR012340+80-179+\|IPR013238+83-150+\|IPR023415+370-392+\|IPR036055+210-254_214-259_314-350_325-349_352-395_360-392_396-422_422-455_423-457_458-496_458-498+\|IPR036640+944-1007_955-1006+\|IPR036898+1-77_1-79+\|IPR050685+423-591+	SM00192+214-252_317-350_356-394_417-456_458-496+	PF00057+213-250_324-348_356-392_396-422_423-454_458-492+Low-density_lipoprotein_receptor_domain_class_A\|PF03876+8-63+SHS2_domain_found_in_N_terminus_of_Rpb7p/Rpc25p/MJ0397\|PF08292+83-150+RNA_polymerase_III_subunit_Rpc25	G3DSA:4.10.400.10:FF:000002+213-253+Low-density_lipoprotein_receptor-related_protein_1\|G3DSA:4.10.400.10:FF:000034+355-395+Low-density_lipoprotein_receptor-related_protein_2	PTHR24270+423-591+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	538-858	2.000	1-537;859-1072	8em7_B	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.802	119977.990	7.831	20.000	26.959	10.261	52.519	47.481	14.925	12.034	54.104

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	1203.709	868.524	1332.922	1245.687	869.769	835.775	552.431	1113.015	2700.297	684.207	1548.246

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.388	0.383	—	-0.550	—	-0.588	0.310	-0.870	1.884	—	—	—	—

No JSON data available for plots.

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