Hg_chrom5_TN10mRNA_11107
Organism: Heterodera glycines Gene Locus: chr5:12212082-12213533 Feature type: polypeptideProtein Sequence
Length: 238
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.635 | 0.684 | 0.993 | 0.869 | 1.05 | 0.97 | 1.15 | 1.681 | 1.494 | 1.079 | 0.509 | 2.719 | 0.934 | 0.404 | 1.715 | 0.66 | 1.102 | 1.082 | 1.616 | 0.989 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10466
|
— | — |
1.444
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.161
|
0.538
|
0.277
|
0.416
|
0.368
|
0.432
|
0.570
|
0.009
|
0.164
|
0.928
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002856
|
2.000
|
1.000
|
Hsc_gene_14944.t1
|
Hsc_gene_14944.t1
|
— | — |
KAI3411107.1 Lipase (class 2) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016042|GO:0016787
|
— |
IPR002918+30-234_35-237+|IPR029058+22-231_54-200+
|
— |
PF01674+30-234+Lipase_(class_2)
|
— |
PTHR32015+35-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-238
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
27068.090
|
7.401
|
4.000
|
26.891
|
12.185
|
44.958
|
55.042
|
15.126
|
11.765
|
46.639
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
17.774
|
2.948
|
3.406
|
10.100
|
6.645
|
7.570
|
7.406
|
35.614
|
0.000
|
50.129
|
28.645
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.633
|
1.679
|
— | — | — |
2.130
|
-2.124
|
— |
4.193
|
— | — | — |
No JSON data available for plots.