Hg_chrom5_TN10mRNA_11109
Organism: Heterodera glycines Gene Locus: chr5:12216105-12221164 Feature type: polypeptideProtein Sequence
Length: 434
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 0.911 | 1.424 | 1.192 | 0.883 | 0.886 | 0.905 | 1.843 | 1.178 | 1.432 | 0.559 | 1.22 | 1.344 | 1.152 | 0.846 | 0.625 | 0.869 | 0.803 | 2.481 | 1.355 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10468
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular|endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.942
|
0.159
|
0.000
|
— |
0.133
|
0.186
|
0.036
|
0.289
|
0.637
|
0.415
|
0.531
|
0.028
|
0.256
|
0.801
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002854
|
2.000
|
1.000
|
Hsc_gene_14946.t1
|
Hsc_gene_14946.t1
|
— |
Q8MYN5.1 Aspartic protease 17 [Caenorhabditis elegans]
|
CDJ94867.1 Peptidase A1 domain containing protein [Haemonchus contortus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004190|GO:0006508
|
GO:0005575_0.754|GO:0110165_0.754|GO:0008150_0.747|GO:0003674_0.625|GO:0003824_0.580|GO:0016020_0.570|GO:0005622_0.558|GO:0005737_0.558
|
IPR001461+28-402_72-92_238-251_286-297_376-391+|IPR021109+7-403_60-400_65-247+|IPR033121+66-400_66-401+|IPR034164+66-400+
|
— |
PF00026+66-401+Eukaryotic_aspartyl_protease
|
— |
PTHR47966+28-402+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-434
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
49618.370
|
4.824
|
-15.000
|
24.654
|
16.359
|
41.705
|
58.295
|
11.521
|
13.134
|
49.078
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
468.607
|
72.198
|
176.361
|
164.973
|
50.060
|
29.577
|
58.119
|
61.931
|
124.255
|
1727.009
|
1040.114
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.060
|
1.056
|
— |
-1.755
|
-0.744
|
0.985
|
0.972
|
— | — | — | — | — | — |