Hg_chrom5_TN10mRNA_11111
Organism: Heterodera glycines Gene Locus: chr5:12225993-12227274 Feature type: polypeptideProtein Sequence
Length: 116
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.203 | 0.2 | 0.47 | 1.189 | 0.862 | 0.442 | 1.026 | 1.724 | 1.149 | 0.699 | 0.784 | 2.028 | 0.718 | 1.16 | 0.88 | 0.739 | 1.837 | 1.176 | 3.316 | 1.014 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10470
|
— | — |
1.444
|
2.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.683
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus|extracellular|mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.670
|
0.728
|
0.200
|
0.504
|
0.113
|
0.104
|
0.124
|
0.351
|
0.130
|
0.908
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001631
|
3.000
|
1.000
|
Hsc_gene_14947.t1
|
Hsc_gene_14947.t1
|
— |
Q9NR19.1 Acetyl-coenzyme A synthetase, cytoplasmic [Homo sapiens]
|
KAI1717150.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.729|GO:0110165_0.723|GO:0008150_0.711|GO:0003674_0.696|GO:0003824_0.553|GO:0008152_0.548|GO:0009987_0.519|GO:0016405_0.510|GO:0016874_0.510|GO:0016877_0.510|GO:0016878_0.510|GO:0005622_0.501
|
IPR000873+2-92+|IPR042099+1-104+
|
— |
PF00501+2-92+AMP-binding_enzyme
|
— |
PTHR24095+1-97+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-116
|
8u2u_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
12759.730
|
8.142
|
4.000
|
20.690
|
13.793
|
39.655
|
60.345
|
12.931
|
7.759
|
56.034
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
blue
|
215.123
|
14.984
|
25.809
|
12.005
|
12.323
|
29.207
|
32.573
|
38.947
|
3.969
|
875.993
|
502.269
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.995
|
— |
1.257
|
— | — | — |
-7.929
|
— |
-5.698
|
— | — |
No JSON data available for plots.