Hg_chrom5_TN10mRNA_11112
Organism: Heterodera glycines Gene Locus: chr5:12227276-12230484 Feature type: polypeptideProtein Sequence
Length: 445
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.437 | 0.627 | 0.858 | 1.007 | 0.712 | 0.634 | 0.963 | 1.685 | 1.149 | 1.215 | 0.681 | 1.454 | 0.936 | 0.735 | 1.147 | 1.091 | 0.958 | 1.294 | 1.21 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10471
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — |
17-43
|
0.956
|
12-32
|
0.999
|
— | — |
0.000
|
— | — |
0.182
|
0.221
|
0.153
|
0.406
|
0.419
|
0.324
|
0.356
|
0.043
|
0.416
|
0.220
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002045
|
2.000
|
2.000
|
Hsc_gene_14909.t1;Hsc_gene_19437.t1
|
Hsc_gene_14909.t1;Hsc_gene_14947.t1;Hsc_gene_19437.t1
|
— |
Q9VP61.1 Acetyl-coenzyme A synthetase [Drosophila melanogaster]
|
KAI1717150.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.728|GO:0003674_0.726|GO:0005575_0.719|GO:0110165_0.708|GO:0003824_0.587|GO:0009987_0.574|GO:0016020_0.571|GO:0008152_0.544|GO:0005622_0.511
|
IPR000873+216-422+|IPR020845+398-409+|IPR042099+204-433+
|
— |
PF00501+216-422+AMP-binding_enzyme
|
— |
PTHR24095+216-421+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-445
|
7kcp_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.762
|
47728.990
|
8.198
|
12.500
|
22.472
|
9.888
|
41.124
|
58.876
|
13.483
|
8.989
|
56.629
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.