Hg_chrom5_TN10mRNA_11113
Organism: Heterodera glycines Gene Locus: chr5:12236911-12239850 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.146 | 0.524 | 0.922 | 0.291 | 0.657 | 1.806 | 0.838 | 1.268 | 0.939 | 1.18 | 0.469 | 1.823 | 0.782 | 1.029 | 1.725 | 1.087 | 1.247 | 0.939 | 1.3 | 0.746 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10472
|
— | — |
1.444
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
7-27
|
0.971
|
— | — | — | — |
0.000
|
— | — |
0.239
|
0.223
|
0.143
|
0.552
|
0.073
|
0.141
|
0.109
|
0.036
|
0.169
|
0.608
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000490
|
5.000
|
2.000
|
Hsc_gene_19435.t1;Hsc_gene_8566.t1
|
— | — |
Q19020.1 Dynein heavy chain, cytoplasmic [Caenorhabditis elegans]
|
ATU47260.1 dynein heavy chain, partial [Rhynchophorus ferrugineus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0007018|GO:0030286|GO:0045505|GO:0051959
|
GO:0008150_0.936|GO:0005575_0.898|GO:0110165_0.890|GO:0009987_0.877|GO:0005622_0.796|GO:0043226_0.729|GO:0016020_0.707|GO:0043229_0.705|GO:0071944_0.669|GO:0003674_0.647|GO:0005737_0.644|GO:0005886_0.566|GO:0043228_0.566|GO:0043232_0.566|GO:0043227_0.565|GO:0071840_0.558|GO:0007017_0.555|GO:0016043_0.552|GO:0051179_0.547|GO:0006810_0.538|GO:0051234_0.538|GO:0005856_0.514|GO:0006996_0.510|GO:0051641_0.502
|
IPR026983+88-259+|IPR027417+80-245+|IPR029044+2-112_15-87+|IPR054354+148-240+
|
— |
PF22597+148-240+Dynein_heavy_chain,_ATPase_lid_domain
|
— |
PTHR45703+88-259+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
262-355
|
1.000
|
1-261
|
9e14_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.833
|
39379.770
|
9.942
|
13.500
|
23.099
|
9.577
|
47.606
|
52.394
|
14.085
|
9.014
|
51.831
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
58.299
|
26.321
|
35.761
|
51.515
|
54.426
|
47.916
|
99.819
|
36.756
|
12.689
|
113.348
|
70.209
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.833
|
0.631
|
— | — |
1.070
|
-0.491
|
1.585
|
— | — | — | — | — |
No JSON data available for plots.