Hg_chrom5_TN10mRNA_11114
Organism: Heterodera glycines Gene Locus: chr5:12241863-12244231 Feature type: polypeptideProtein Sequence
Length: 169
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 0.688 | 0.968 | 0.816 | 1.085 | 1.669 | 0.845 | 1.479 | 0.92 | 1.519 | 0.986 | 0.348 | 0.493 | 0.91 | 1.208 | 0.761 | 0.873 | 1.614 | 0.91 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10473
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|mitochondrion|peroxisome
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.477
|
0.681
|
0.051
|
0.575
|
0.086
|
0.135
|
0.158
|
0.807
|
0.291
|
0.160
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001631
|
3.000
|
1.000
|
Hsc_gene_14947.t1
|
Hsc_gene_14947.t1
|
— |
Q9VP61.1 Acetyl-coenzyme A synthetase [Drosophila melanogaster]
|
KAH7689531.1 Protein ACS-19 b [Aphelenchus avenae]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.726|GO:0003674_0.724|GO:0110165_0.721|GO:0008150_0.699|GO:0005622_0.614|GO:0003824_0.597|GO:0005737_0.577|GO:0008152_0.570|GO:0009987_0.539|GO:0016020_0.533|GO:0016405_0.531|GO:0016874_0.531|GO:0016877_0.531|GO:0016878_0.531
|
IPR025110+45-123+|IPR045851+35-164+
|
— |
PF13193+45-123+AMP-binding_enzyme_C-terminal_domain
|
— |
PTHR24095+35-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-169
|
2p2b_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.663
|
18601.350
|
7.753
|
3.500
|
27.219
|
7.101
|
47.337
|
52.663
|
15.385
|
11.834
|
51.479
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
241.071
|
265.651
|
228.917
|
239.035
|
213.902
|
214.402
|
172.331
|
368.931
|
34.609
|
390.041
|
237.713
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.444
|
-0.289
|
0.171
|
— | — |
-0.306
|
0.678
|
-0.956
|
-3.597
|
— | — | — | — |
No JSON data available for plots.