SCN Proteipedia

Hg_chrom5_TN10mRNA_11115

Organism: Heterodera glycines Gene Locus: chr5:12246740-12247749 Feature type: polypeptide

Protein Sequence

Length: 110

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.74	2.326	1.157	0.313	0.606	0.932	0.866	2.273	1.212	1.597	0.689	0.535	1.515	0.524	1.299	0.909	1.192	0.551	1.399	0.267	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10474	—	—	2.111	2.000	2.000	2.000	2.000	2.000	2.000	1.000	2.000	4.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	26-Not_Clustered	0.562

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.891	0.291	0.195	0.340	0.232	0.209	0.067	0.335	0.061	0.066

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0003766	2.000	1.000	Hsc_gene_14910.t1	Hsc_gene_14910.t1	—	—	KAI1721382.1 RAD51-like protein 1 [Ditylenchus destructor]	MCD6350759	0.520

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.908\|GO:0008150_0.906\|GO:0009987_0.834\|GO:0003674_0.792\|GO:0050896_0.776\|GO:0005488_0.763\|GO:0008152_0.749\|GO:0051716_0.741\|GO:0043170_0.738\|GO:0044238_0.732\|GO:0005515_0.724\|GO:0006950_0.722\|GO:0071840_0.717\|GO:0006139_0.715\|GO:0016043_0.712\|GO:0090304_0.705\|GO:0033554_0.689\|GO:0022414_0.688\|GO:0006996_0.687\|GO:0044085_0.683\|GO:0022607_0.680\|GO:0019953_0.679\|GO:0043933_0.679\|GO:0065003_0.678\|GO:0007049_0.676\|GO:0022402_0.676\|GO:0000280_0.675\|GO:0048285_0.675\|GO:0006259_0.673\|GO:0000279_0.670\|GO:0000712_0.670\|GO:0000724_0.670\|GO:0000725_0.670\|GO:0000730_0.670\|GO:0006281_0.670\|GO:0006302_0.670\|GO:0006310_0.670\|GO:0006974_0.670\|GO:0007127_0.670\|GO:0007131_0.670\|GO:0007134_0.670\|GO:0022403_0.670\|GO:0035825_0.670\|GO:0044848_0.670\|GO:0045003_0.670\|GO:0051321_0.670\|GO:0051326_0.670\|GO:0061982_0.670\|GO:0065004_0.670\|GO:0071824_0.670\|GO:0090735_0.670\|GO:0098762_0.670\|GO:0098764_0.670\|GO:0140013_0.670\|GO:0140527_0.670\|GO:1903046_0.670\|GO:0019899_0.661\|GO:0051117_0.650\|GO:0032991_0.629\|GO:0033061_0.540	IPR027417+1-109_5-105+	—	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5	1.000	6-110	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.855	12390.910	8.117	3.500	25.455	12.727	52.727	47.273	15.455	10.000	50.909

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	brown	137.259	128.214	132.659	198.140	275.234	288.246	149.858	170.104	9.446	90.004	55.479

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	0.491	0.687	0.442	—	-0.936	-0.863	—	—	4.585	—	—	—

No JSON data available for plots.

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