Hg_chrom5_TN10mRNA_11116
Organism: Heterodera glycines Gene Locus: chr5:12248781-12250712 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 0.695 | 0.494 | 0.75 | 0.77 | 1.324 | 0.679 | 1.495 | 0.725 | 2.093 | 0.618 | 1.119 | 1.359 | 1.306 | 1.165 | 1.009 | 1.381 | 0.865 | 1.045 | 0.32 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10475
|
— | — |
1.889
|
2.000
|
2.000
|
1.000
|
3.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
KKHRPFDWPSEYGTRLSRR
|
34-62
|
0.993
|
26-63
|
0.997
|
— | — |
0.000
|
— | — |
0.089
|
0.186
|
0.032
|
0.294
|
0.458
|
0.189
|
0.340
|
0.064
|
0.247
|
0.179
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000589
|
7.000
|
0.000
|
0.000
|
Hsc_gene_15881.t1
|
— |
Q08357.1 Sodium-dependent phosphate transporter 2 [Homo sapiens]
|
KAI6181297.1 Phosphate transporter [Aphelenchoides besseyi];KAI6212156.1 Phosphate transporter [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005315|GO:0006817|GO:0016020
|
GO:0008150_0.946|GO:0009987_0.753|GO:0005575_0.743|GO:0110165_0.737|GO:0003674_0.679|GO:0016020_0.670|GO:0051179_0.658|GO:0006810_0.638|GO:0051234_0.638|GO:0071944_0.602|GO:0005886_0.583|GO:0055085_0.546|GO:0015698_0.515|GO:0005215_0.509|GO:0022857_0.509|GO:0015318_0.503
|
IPR001204+75-129+
|
— |
PF01384+75-129+Phosphate_transporter_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
283-368
|
1.000
|
1-282
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
40716.370
|
9.324
|
14.500
|
20.109
|
10.326
|
43.750
|
56.250
|
12.772
|
7.337
|
49.457
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
221.671
|
1128.575
|
257.891
|
247.240
|
138.265
|
152.306
|
152.346
|
310.379
|
97.761
|
1.365
|
42.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.359
|
-2.328
|
— |
-0.871
|
— | — |
0.927
|
-0.887
|
— | — |
5.743
|
— | — |
No JSON data available for plots.