Hg_chrom5_TN10mRNA_11117
Organism: Heterodera glycines Gene Locus: chr5:12251247-12252640 Feature type: polypeptideProtein Sequence
Length: 177
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.248 | 1.051 | 0.719 | 1.364 | 0.659 | 0.724 | 0.538 | 0.565 | 1.883 | 1.451 | 0.514 | 0.332 | 1.099 | 0.761 | 1.153 | 2.179 | 1.019 | 0.685 | 0.435 | 0.332 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10476
|
— | — |
1.889
|
1.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
31-51
|
0.997
|
— | — |
0.000
|
— | — |
0.708
|
0.226
|
0.060
|
0.303
|
0.363
|
0.327
|
0.224
|
0.033
|
0.106
|
0.065
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002271
|
3.000
|
1.000
|
Hsc_gene_18846.t1
|
Hsc_gene_18846.t1
|
— |
Q09535.1 Putative pachytene checkpoint protein 2 [Caenorhabditis elegans]
|
KAH7726988.1 CBN-PCH-2 protein [Aphelenchus avenae]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.910|GO:0110165_0.893|GO:0005622_0.842|GO:0008150_0.795|GO:0009987_0.727|GO:0043226_0.697|GO:0043229_0.696|GO:0071840_0.600|GO:0016043_0.598|GO:0006996_0.574|GO:0007049_0.558|GO:0022402_0.557|GO:0048285_0.557|GO:0000280_0.556|GO:0016020_0.553|GO:0008152_0.535|GO:0044238_0.518|GO:0043170_0.512
|
IPR003960+51-70+|IPR027417+17-98_45-136+|IPR044539+46-170+
|
— | — | — |
PTHR45991+46-170+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-177
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
18872.570
|
7.881
|
3.000
|
18.079
|
6.780
|
46.893
|
53.107
|
10.169
|
7.910
|
57.627
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.348
|
0.760
|
0.522
|
0.185
|
0.409
|
0.000
|
0.000
|
0.134
|
1.028
|
0.000
|
0.441
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.