Hg_chrom5_TN10mRNA_11118
Organism: Heterodera glycines Gene Locus: chr5:12252895-12253646 Feature type: polypeptideProtein Sequence
Length: 193
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.904 | 0.843 | 0.754 | 0.536 | 0.777 | 1.063 | 0.74 | 0.777 | 1.267 | 1.75 | 0.785 | 1.829 | 2.303 | 1.196 | 0.952 | 0.888 | 1.019 | 0.785 | 0.399 | 0.61 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10477
|
— | — |
1.889
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.435
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.387
|
— | — |
0.264
|
0.468
|
0.103
|
0.411
|
0.427
|
0.420
|
0.169
|
0.226
|
0.111
|
0.287
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002271
|
3.000
|
1.000
|
Hsc_gene_18846.t1
|
Hsc_gene_15881.t1;Hsc_gene_15882.t1;Hsc_gene_18846.t1
|
— |
A2XUN8.2 Pachytene checkpoint protein 2 homolog [Oryza sativa Indica Group]
|
XP_043653950.1 pachytene checkpoint protein 2 homolog [Drosophila teissieri]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0016887
|
GO:0005575_0.916|GO:0110165_0.910|GO:0005622_0.824|GO:0008150_0.812|GO:0009987_0.755|GO:0043226_0.674|GO:0043229_0.663|GO:0071840_0.630|GO:0016043_0.618|GO:0006996_0.591|GO:0007049_0.572|GO:0022402_0.572|GO:0000280_0.571|GO:0048285_0.571|GO:0016020_0.563|GO:0008152_0.539|GO:0044238_0.518
|
IPR003959+164-187+|IPR027417+140-192_157-185+|IPR044539+144-191+
|
— |
PF00004+164-187+ATPase_family_associated_with_various_cellular_activities_(AAA)
|
— |
PTHR45991+144-191+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-193
|
6lk0_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
21553.170
|
8.268
|
3.500
|
20.207
|
12.435
|
40.415
|
59.585
|
11.399
|
8.808
|
47.150
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
50.312
|
86.341
|
68.505
|
39.558
|
29.929
|
27.631
|
53.048
|
60.516
|
57.863
|
39.644
|
47.452
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.568
|
-1.263
|
-0.680
|
— | — |
0.952
|
1.024
|
— | — | — | — | — | — |
No JSON data available for plots.