Hg_chrom5_TN10mRNA_11119
Organism: Heterodera glycines Gene Locus: chr5:12254127-12256567 Feature type: polypeptideProtein Sequence
Length: 254
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.916 | 1.007 | 1.074 | 1.086 | 0.656 | 0.707 | 0.656 | 1.969 | 0.787 | 1.383 | 0.954 | 0.695 | 1.531 | 0.833 | 1.527 | 1.237 | 0.839 | 1.133 | 0.909 | 0.463 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10478
|
— |
Hg_chrom5_TN10gene_10478
|
1.556
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
FKRR
|
44-69
|
0.962
|
15-52
|
0.999
|
— | — |
0.000
|
— | — |
0.086
|
0.960
|
0.067
|
0.136
|
0.031
|
0.047
|
0.099
|
0.030
|
0.089
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001249
|
4.000
|
1.000
|
Hsc_gene_18842.t1
|
Hsc_gene_18842.t1
|
— |
Q5XIM4.1 ATP synthase subunit s, mitochondrial [Rattus norvegicus]
|
KAH7717572.1 Protein C05C8.1 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.878|GO:0110165_0.878|GO:0005622_0.823|GO:0016020_0.790|GO:0043226_0.766|GO:0043229_0.765|GO:0005737_0.762|GO:0043227_0.743|GO:0043231_0.731|GO:0031090_0.572|GO:0005739_0.568|GO:0031967_0.559|GO:0005740_0.551|GO:0031966_0.551|GO:0005743_0.549|GO:0019866_0.549
|
IPR006553+162-187_190-215+|IPR032675+72-252+
|
SM00367+162-187_190-215+
|
— | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-254
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.825
|
28430.590
|
9.534
|
15.000
|
27.559
|
12.205
|
48.425
|
51.575
|
17.717
|
9.843
|
52.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
120.821
|
84.703
|
118.093
|
45.144
|
17.475
|
22.214
|
26.350
|
66.152
|
379.622
|
101.327
|
220.596
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.045
|
-1.279
|
-1.406
|
— | — |
1.467
|
-1.187
|
— | — | — | — | — |
No JSON data available for plots.