Hg_chrom5_TN10mRNA_11120
Organism: Heterodera glycines Gene Locus: chr5:12255290-12255832 Feature type: polypeptideProtein Sequence
Length: 125
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.837 | 0.93 | 1.018 | 1.931 | 2.133 | 1.641 | 1.048 | 2.0 | 0.533 | 0.865 | 0.0 | 0.471 | 1.111 | 0.769 | 1.959 | 0.571 | 1.049 | 1.091 | 0.615 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10479
|
Hg_chrom5_TN10gene_10479
|
— |
1.889
|
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.519
|
0.504
|
0.046
|
0.427
|
0.135
|
0.043
|
0.085
|
0.060
|
0.095
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002272
|
3.000
|
1.000
|
Hsc_gene_18841.t1
|
Hsc_gene_18841.t1;Hsc_gene_18843.t1
|
— |
Q5U567.1 Protein pelota homolog [Xenopus laevis]
|
KAF7636052.1 Pelota-like protein [Meloidogyne graminicola]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.926|GO:0065007_0.873|GO:0009987_0.870|GO:0050789_0.869|GO:0050794_0.843|GO:0008152_0.646|GO:0043170_0.633|GO:0019222_0.626|GO:0048519_0.625|GO:0044237_0.623|GO:0060255_0.619|GO:0005575_0.618|GO:0009058_0.618|GO:0009059_0.618|GO:0010467_0.618|GO:0044249_0.618|GO:0031323_0.615|GO:0110165_0.615|GO:0048523_0.610|GO:0009889_0.598|GO:0031326_0.598|GO:0010468_0.594|GO:0010556_0.594|GO:0009892_0.575|GO:0010605_0.570|GO:0031324_0.569|GO:0009890_0.564|GO:0031327_0.564|GO:0010558_0.563|GO:0010629_0.557|GO:0005622_0.528|GO:0016043_0.520|GO:0071840_0.520|GO:0044238_0.518
|
IPR029064+68-119_78-103+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
92-125
|
1.000
|
1-91
|
5eo3_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
13954.310
|
4.502
|
-8.500
|
32.000
|
8.800
|
52.800
|
47.200
|
13.600
|
18.400
|
52.800
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.