Hg_chrom5_TN10mRNA_11122
Organism: Heterodera glycines Gene Locus: chr5:12257283-12258120 Feature type: polypeptideProtein Sequence
Length: 170
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.616 | 0.958 | 0.856 | 0.406 | 0.686 | 1.207 | 0.63 | 1.471 | 1.699 | 1.351 | 1.248 | 1.73 | 1.797 | 0.792 | 1.321 | 1.008 | 0.289 | 1.248 | 0.905 | 1.038 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10481
|
— | — |
1.556
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
53-84
|
0.968
|
— | — | — | — |
0.000
|
— | — |
0.775
|
0.348
|
0.033
|
0.513
|
0.084
|
0.112
|
0.041
|
0.083
|
0.032
|
0.031
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002273
|
3.000
|
1.000
|
Hsc_gene_18640.t1
|
Hsc_gene_18640.t1
|
— |
Q14692.1 Ribosome biogenesis protein BMS1 homolog [Homo sapiens]
|
KAF7636072.1 Bms1-type G domain-containing protein [Meloidogyne graminicola]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525|GO:0005634|GO:0042254
|
GO:0005575_0.906|GO:0110165_0.900|GO:0005622_0.865|GO:0016020_0.841|GO:0043226_0.832|GO:0043229_0.817|GO:0043227_0.785|GO:0043231_0.768|GO:0008150_0.701|GO:0009987_0.645|GO:0005634_0.638|GO:0043228_0.623|GO:0043232_0.623|GO:0003674_0.609|GO:0031974_0.581|GO:0043233_0.581|GO:0070013_0.581|GO:0031981_0.573|GO:0005730_0.554|GO:0005488_0.540|GO:0071840_0.512
|
IPR000795+2-76+|IPR012948+92-170_104-159+|IPR027417+1-106_2-76+|IPR039761+1-158+
|
SM00785+92-170+
|
PF00009+2-76+Elongation_factor_Tu_GTP_binding_domain|PF08142+104-159+AARP2CN_(NUC121)_domain
|
— |
PTHR12858+1-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-170
|
7mq8_SI
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
19661.060
|
10.292
|
12.500
|
26.471
|
14.118
|
44.118
|
55.882
|
17.647
|
8.824
|
41.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
8.041
|
2.449
|
3.981
|
2.594
|
2.006
|
3.756
|
15.330
|
7.037
|
21.051
|
5.460
|
12.142
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
2.043
|
— |
1.269
|
— | — | — | — | — |
No JSON data available for plots.