Hg_chrom5_TN10mRNA_11123
Organism: Heterodera glycines Gene Locus: chr5:12258070-12260729 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.296 | 1.6 | 0.404 | 2.444 | 1.203 | 0.873 | 0.0 | 0.196 | 1.149 | 1.511 | 0.518 | 1.466 | 0.338 | 1.137 | 0.88 | 0.865 | 0.578 | 1.353 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10482
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.940
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKLFGYSLRGRKRNE,RKNDEGQSQRNKKEEK,KKERLRKLFGYSLRGRKRN,AKGAKKERLRKLFGYSLRGRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.910
|
0.041
|
0.028
|
0.275
|
0.066
|
0.016
|
0.028
|
0.015
|
0.026
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002273
|
3.000
|
1.000
|
Hsc_gene_18640.t1
|
— | — |
Q14692.1 Ribosome biogenesis protein BMS1 homolog [Homo sapiens]
|
KAF7636072.1 Bms1-type G domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042254
|
GO:0005575_0.935|GO:0110165_0.935|GO:0005622_0.887|GO:0016020_0.842|GO:0043226_0.835|GO:0043229_0.811|GO:0043227_0.773|GO:0008150_0.744|GO:0043231_0.736|GO:0009987_0.688|GO:0043228_0.687|GO:0043232_0.687|GO:0005634_0.655|GO:0003674_0.641|GO:0005488_0.640|GO:0031974_0.618|GO:0043233_0.618|GO:0070013_0.618|GO:0031981_0.609|GO:0071840_0.594|GO:0005730_0.566|GO:0032991_0.542|GO:0044085_0.514|GO:0097159_0.505
|
IPR039761+122-308+
|
— | — | — |
PTHR12858+122-308+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
106-227
|
2.000
|
1-105;228-341
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.853
|
38989.550
|
4.325
|
-27.000
|
39.003
|
8.504
|
60.704
|
39.296
|
15.543
|
23.460
|
46.334
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
turquoise
|
183.136
|
259.926
|
210.834
|
177.226
|
236.028
|
168.890
|
192.061
|
174.890
|
103.678
|
191.015
|
153.585
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.534
|
-0.690
|
— |
0.382
|
-0.468
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.