Hg_chrom5_TN10mRNA_11128
Organism: Heterodera glycines Gene Locus: chr5:12273733-12274775 Feature type: polypeptideProtein Sequence
Length: 144
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.323 | 1.615 | 0.884 | 1.676 | 1.042 | 1.959 | 0.496 | 0.694 | 0.617 | 1.595 | 1.578 | 1.225 | 1.736 | 0.801 | 1.417 | 0.595 | 1.138 | 0.21 | 1.068 | 0.817 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10487
|
— | — |
1.444
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_6605
|
— |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
nucleus
|
KRKH,KKGNDQKKPLTRKSER
|
— | — | — | — |
1-18
|
0.999
|
1.000
|
0.000
|
0.000
|
0.154
|
0.210
|
0.012
|
0.161
|
0.086
|
0.061
|
0.075
|
0.020
|
0.162
|
0.954
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_6605.t1
|
— | — | — |
WP_280591047
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
128-144
|
1.000
|
1-127
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
17077.650
|
9.527
|
10.000
|
29.861
|
11.806
|
55.556
|
44.444
|
18.750
|
11.111
|
40.278
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkgreen
|
1913.000
|
317.767
|
1026.463
|
534.106
|
358.191
|
434.436
|
265.907
|
1020.059
|
7441.367
|
1304.503
|
3934.588
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.463
|
0.612
|
-0.835
|
-0.609
|
0.293
|
-0.698
|
1.127
|
-1.797
|
2.424
|
-3.663
|
— | — | — |