Hg_chrom5_TN10mRNA_11129
Organism: Heterodera glycines Gene Locus: chr5:12275734-12277176 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.004 | 0.85 | 0.966 | 0.802 | 0.997 | 0.852 | 2.927 | 1.329 | 0.664 | 0.539 | 0.654 | 0.977 | 0.369 | 2.236 | 1.424 | 0.617 | 0.218 | 0.403 | 0.767 | 0.391 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10488
|
— | — |
1.222
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RKRR,RRGP
|
— | — | — | — | — | — |
0.000
|
— | — |
0.067
|
0.294
|
0.021
|
0.138
|
0.137
|
0.036
|
0.119
|
0.022
|
0.231
|
0.744
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004248
|
2.000
|
1.000
|
Hsc_gene_6606.t1
|
Hsc_gene_6606.t1
|
— | — |
KAI1728807.1 cuticle collagen lon-3 [Ditylenchus destructor]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.900|GO:0032502_0.773|GO:0048856_0.773|GO:0032501_0.767|GO:0005575_0.702|GO:0110165_0.693|GO:0003674_0.690|GO:0030312_0.662|GO:0071944_0.662|GO:0007275_0.536
|
IPR050632+2-265+
|
— | — | — |
PTHR24637+2-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-301
|
0.000
|
— |
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.960
|
30116.090
|
7.383
|
4.000
|
25.249
|
6.312
|
37.874
|
62.126
|
13.953
|
11.296
|
64.452
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
122.210
|
197.593
|
114.631
|
52.886
|
23.321
|
220.033
|
14.486
|
118.628
|
3.438
|
253.999
|
146.616
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.017
|
-2.039
|
-1.005
|
-1.216
|
3.256
|
-3.916
|
-1.004
|
-2.889
|
-6.338
|
4.136
|
— | — | — |
No JSON data available for plots.