Hg_chrom5_TN10mRNA_11132
Organism: Heterodera glycines Gene Locus: chr5:12280864-12284351 Feature type: polypeptideProtein Sequence
Length: 657
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.796 | 0.814 | 0.803 | 0.63 | 1.522 | 1.327 | 0.399 | 1.446 | 1.184 | 1.563 | 0.738 | 0.985 | 1.48 | 0.82 | 1.274 | 1.196 | 0.774 | 0.899 | 1.054 | 0.94 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10491
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
38-59
|
0.993
|
— | — | — | — |
0.000
|
— | — |
0.407
|
0.213
|
0.027
|
0.593
|
0.236
|
0.223
|
0.280
|
0.194
|
0.163
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004251
|
2.000
|
1.000
|
Hsc_gene_6589.t1
|
— | — |
Q9VS46.2 RINT1-like protein [Drosophila melanogaster]
|
KAI1718891.1 RINT-1 / TIP-1 family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006888|GO:0006890|GO:0070939
|
GO:0008150_0.853|GO:0009987_0.804|GO:0005575_0.757|GO:0110165_0.746|GO:0005622_0.701|GO:0016020_0.674|GO:0005737_0.635|GO:0043226_0.630|GO:0043229_0.621|GO:0043227_0.597|GO:0043231_0.575|GO:0071840_0.566|GO:0016043_0.562|GO:0006996_0.519|GO:0071944_0.512|GO:0005886_0.503
|
IPR007528+23-486_78-657_174-390+|IPR042042+136-265+
|
— |
PF04437+174-390+RINT-1/TIP-1_family
|
— |
PTHR13520+23-486+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-657
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.575
|
75652.240
|
5.936
|
-6.500
|
27.549
|
12.785
|
49.315
|
50.685
|
14.003
|
13.546
|
43.227
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
steelblue
|
689.986
|
737.880
|
980.866
|
749.174
|
615.762
|
552.444
|
649.660
|
819.865
|
364.160
|
830.948
|
630.896
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.181
|
-0.115
|
-0.280
|
-0.315
|
— |
0.243
|
0.464
|
— | — | — | — | — | — |
No JSON data available for plots.