SCN Proteipedia

Hg_chrom5_TN10mRNA_11138

Organism: Heterodera glycines Gene Locus: chr5:12294803-12297046 Feature type: polypeptide

Protein Sequence

Length: 339

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.823	0.892	0.644	0.305	0.836	3.631	0.527	1.18	0.852	1.116	0.268	2.082	1.147	2.439	1.023	1.054	0.822	0.805	0.454	0.347	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_10497	—	—	1.333	2.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	3.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.850

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.604	0.069	0.004	0.540	0.204	0.111	0.190	0.042	0.049	0.068

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004255	2.000	1.000	Hsc_gene_6598.t1	—	—	Q8C7E9.2 Cleavage stimulation factor subunit 2 tau variant [Mus musculus]	KAF7634821.1 RRM domain-containing protein [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0003723\|GO:0031124	GO:0008150_0.831\|GO:0005575_0.829\|GO:0110165_0.819\|GO:0003674_0.755\|GO:0005488_0.755\|GO:0005622_0.752\|GO:0016020_0.718\|GO:0009987_0.669\|GO:0043226_0.666\|GO:0043229_0.653\|GO:0008152_0.642\|GO:0043170_0.642\|GO:0043227_0.623\|GO:0043231_0.608\|GO:0044238_0.608\|GO:0006139_0.590\|GO:0016070_0.589\|GO:0090304_0.589\|GO:0097159_0.576\|GO:0003676_0.569\|GO:0065007_0.547\|GO:0009058_0.542\|GO:0009059_0.542\|GO:0010467_0.542\|GO:0044237_0.542\|GO:0044249_0.542\|GO:0050789_0.539\|GO:0003723_0.511	IPR000504+7-88_17-62_17-84+\|IPR012677+15-61+\|IPR025742+130-170+\|IPR026896+296-334+\|IPR035979+17-62+\|IPR038192+293-338+	SM00360+17-84+	PF00076+17-62+RNA_recognition_motif\|PF14304+296-334+Transcription_termination_and_cleavage_factor_C-terminal\|PF14327+130-170+Hinge_domain_of_cleavage_stimulation_factor_subunit_2	—	PTHR45735+130-334+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	87-339	1.000	1-86	6q2i_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.777	37775.710	6.081	-2.000	17.699	8.260	48.083	51.917	9.145	8.555	50.147

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	518.396	308.174	196.165	190.635	177.217	167.504	232.285	198.609	128.137	1620.410	980.865

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.882	-0.830	—	—	—	0.483	—	0.369	-3.776	—	-2.902	—	—

No JSON data available for plots.

Back to Browser