Hg_chrom5_TN10mRNA_11139
Organism: Heterodera glycines Gene Locus: chr5:12297317-12299627 Feature type: polypeptideProtein Sequence
Length: 390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.954 | 0.775 | 0.746 | 0.796 | 0.769 | 1.118 | 0.763 | 1.41 | 1.766 | 1.49 | 0.894 | 1.357 | 1.353 | 0.69 | 0.837 | 1.062 | 0.757 | 1.282 | 0.592 | 0.83 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10498
|
— | — |
2.000
|
2.000
|
1.000
|
2.000
|
2.000
|
2.000
|
3.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Not_Clustered
|
0.944
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane|endoplasmic_reticulum|lysosome_vacuole|golgi_apparatus
|
— | — | — | — |
20-41
|
0.999
|
— | — |
0.000
|
— | — |
0.113
|
0.061
|
0.018
|
0.226
|
0.609
|
0.692
|
0.671
|
0.007
|
0.565
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010167
|
1.000
|
1.000
|
Hsc_gene_6600.t1
|
Hsc_gene_6600.t1;Hsc_gene_6600.t2
|
— |
Q9Z1W8.3 Potassium-transporting ATPase alpha chain 2 [Mus musculus]
|
KAF7630783.1 Cation_ATPase_N domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.870|GO:0005575_0.867|GO:0110165_0.867|GO:0016020_0.780|GO:0009987_0.738|GO:0071944_0.728|GO:0005886_0.703|GO:0051179_0.685|GO:0006810_0.681|GO:0051234_0.681|GO:0003674_0.655|GO:0055085_0.564|GO:0065007_0.545|GO:0006811_0.542|GO:0034220_0.516|GO:0005622_0.511|GO:0043226_0.504
|
IPR004014+61-143_87-136+|IPR008250+192-299+|IPR023298+86-386+|IPR050510+49-386+
|
SM00831+61-143+
|
PF00122+192-385+E1-E2_ATPase|PF00690+87-136+Cation_transporter/ATPase,_N-terminus
|
— |
PTHR43294+49-386+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18
|
1.000
|
19-390
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.728
|
43110.340
|
8.393
|
10.500
|
21.538
|
11.282
|
41.282
|
58.718
|
12.821
|
8.718
|
48.462
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
steelblue
|
130.002
|
87.902
|
161.319
|
80.849
|
95.910
|
102.663
|
105.359
|
308.408
|
151.286
|
101.890
|
123.060
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
— |
-0.889
|
— | — | — |
1.480
|
-1.408
|
— | — | — | — | — |
No JSON data available for plots.