Hg_chrom5_TN10mRNA_11140
Organism: Heterodera glycines Gene Locus: chr5:12300551-12300989 Feature type: polypeptideProtein Sequence
Length: 79
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.589 | 1.178 | 0.23 | 1.309 | 1.477 | 1.298 | 0.603 | 0.0 | 0.844 | 1.711 | 0.959 | 1.489 | 1.758 | 0.0 | 2.067 | 1.447 | 0.83 | 0.575 | 0.974 | 1.117 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10499
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.360
|
0.528
|
0.025
|
0.518
|
0.098
|
0.047
|
0.115
|
0.027
|
0.098
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_24199.t1
|
— |
Q22494.1 Probable V-type proton ATPase subunit H 2 [Caenorhabditis elegans]
|
KAH7728056.1 Vacuolar proton pump subunit H [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000221|GO:0046961|GO:1902600
|
GO:0005575_0.939|GO:0008150_0.932|GO:0110165_0.929|GO:0009987_0.869|GO:0016020_0.823|GO:0051179_0.753|GO:0006810_0.739|GO:0051234_0.739|GO:0065007_0.582|GO:0071840_0.579|GO:0016043_0.577|GO:0006996_0.542|GO:0005622_0.526|GO:0042592_0.525|GO:0006811_0.521|GO:0055085_0.521|GO:0032991_0.520|GO:0034220_0.518|GO:0006812_0.516|GO:0098660_0.516|GO:0098655_0.515|GO:0098662_0.515|GO:1902600_0.510
|
IPR004908+1-41+|IPR011989+1-44+
|
— |
PF03224+1-41+V-ATPase_subunit_H
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-79
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.605
|
9261.690
|
9.681
|
5.000
|
26.582
|
11.392
|
51.899
|
48.101
|
16.456
|
10.127
|
39.241
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
midnightblue
|
457.537
|
195.692
|
278.622
|
226.367
|
228.044
|
226.165
|
150.396
|
234.148
|
185.491
|
1285.318
|
813.963
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.281
|
— |
-0.191
|
— | — |
-0.582
|
— |
-0.499
|
-2.915
|
— | — | — | — |
No JSON data available for plots.