Hg_chrom5_TN10mRNA_11141
Organism: Heterodera glycines Gene Locus: chr5:12301076-12301425 Feature type: polypeptideProtein Sequence
Length: 41
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.567 | 1.702 | 0.887 | 1.682 | 2.033 | 1.876 | 0.581 | 1.22 | 0.0 | 0.659 | 1.478 | 2.869 | 1.355 | 0.938 | 0.498 | 0.348 | 0.4 | 1.109 | 3.752 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_10500
|
— | — |
2.333
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
3.000
|
2.000
|
3.000
|
5.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.613
|
0.397
|
0.039
|
0.598
|
0.087
|
0.090
|
0.059
|
0.086
|
0.037
|
0.060
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010168
|
2.000
|
0.000
|
0.000
|
— | — | — | — |
RLJ07405
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.925|GO:0005575_0.885|GO:0110165_0.875|GO:0065007_0.872|GO:0050789_0.854|GO:0009987_0.838|GO:0050794_0.818|GO:0048518_0.758|GO:0023052_0.748|GO:0007154_0.747|GO:0032501_0.732|GO:0048522_0.729|GO:0051179_0.714|GO:0006810_0.711|GO:0051234_0.711|GO:0071840_0.708|GO:0016043_0.707|GO:0032879_0.707|GO:0032502_0.699|GO:0051049_0.697|GO:0005622_0.696|GO:0048856_0.695|GO:0051641_0.693|GO:0048869_0.690|GO:0030154_0.689|GO:0006996_0.688|GO:0007275_0.688|GO:0022414_0.687|GO:0007267_0.686|GO:0051649_0.686|GO:0048731_0.684|GO:0019953_0.683|GO:0033036_0.682|GO:0070727_0.682|GO:0008104_0.681|GO:0050793_0.680|GO:0051128_0.679|GO:0060341_0.677|GO:0009653_0.676|GO:0046907_0.676|GO:0048468_0.676|GO:0051050_0.676|GO:0007049_0.675|GO:0032880_0.675|GO:0051640_0.675|GO:0051656_0.675|GO:0022402_0.674|GO:0048285_0.674|GO:0051235_0.674|GO:0000226_0.670|GO:0000280_0.670|GO:0000902_0.670|GO:0005737_0.670|GO:0005829_0.670|GO:0005886_0.670|GO:0007010_0.670|GO:0007017_0.670|GO:0007018_0.670|GO:0007163_0.670|GO:0007268_0.670|GO:0007399_0.670|GO:0008088_0.670|GO:0008089_0.670|GO:0008090_0.670|GO:0010970_0.670|GO:0010975_0.670|GO:0016020_0.670|GO:0016322_0.670|GO:0016358_0.670|GO:0016482_0.670|GO:0021700_0.670|GO:0022008_0.670|GO:0022603_0.670|GO:0030010_0.670|GO:0030030_0.670|GO:0030054_0.670|GO:0030182_0.670|GO:0030424_0.670|GO:0030705_0.670|GO:0031175_0.670|GO:0031344_0.670|GO:0032252_0.670|GO:0032253_0.670|GO:0032386_0.670|GO:0032388_0.670|GO:0032838_0.670|GO:0035418_0.670|GO:0042551_0.670|GO:0042995_0.670|GO:0043005_0.670|GO:0045202_0.670|GO:0047496_0.670|GO:0048469_0.670|GO:0048489_0.670|GO:0048666_0.670|GO:0048667_0.670|GO:0048699_0.670|GO:0048812_0.670|GO:0048813_0.670|GO:0048814_0.670|GO:0048858_0.670|GO:0050773_0.670|GO:0051293_0.670|GO:0051294_0.670|GO:0051295_0.670|GO:0051296_0.670|GO:0051321_0.670|GO:0051642_0.670|GO:0051648_0.670|GO:0051650_0.670|GO:0051651_0.670|GO:0051653_0.670|GO:0051657_0.670|GO:0051661_0.670|GO:0051932_0.670|GO:0061842_0.670|GO:0071695_0.670|GO:0071944_0.670|GO:0072384_0.670|GO:0097479_0.670|GO:0098590_0.670|GO:0098916_0.670|GO:0098930_0.670|GO:0099111_0.670|GO:0099518_0.670|GO:0099519_0.670|GO:0099536_0.670|GO:0099537_0.670|GO:0099568_0.670|GO:0120025_0.670|GO:0120035_0.670|GO:0120036_0.670|GO:0120039_0.670|GO:0120111_0.670|GO:0140013_0.670|GO:1901950_0.670|GO:1902414_0.670|GO:1902473_0.670|GO:1903046_0.670|GO:1904115_0.670|GO:1904809_0.670|GO:1904811_0.670|GO:1990048_0.670|GO:0043226_0.651|GO:0043229_0.651|GO:0043227_0.613|GO:0043231_0.613|GO:0043228_0.577|GO:0043232_0.577|GO:0005634_0.562|GO:0031967_0.560|GO:0005773_0.559|GO:0012505_0.554|GO:0000775_0.540|GO:0000776_0.540|GO:0000779_0.540|GO:0000793_0.540|GO:0000922_0.540|GO:0005635_0.540|GO:0005694_0.540|GO:0005819_0.540|GO:0005856_0.540|GO:0005938_0.540|GO:0015630_0.540|GO:0098687_0.540|GO:0099080_0.540
|
— | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-41
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.736
|
4887.510
|
4.843
|
-1.500
|
31.707
|
14.634
|
51.220
|
48.780
|
14.634
|
17.073
|
43.902
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
brown
|
61.505
|
59.525
|
84.601
|
68.377
|
76.675
|
58.291
|
187.412
|
105.021
|
8.258
|
22.927
|
16.640
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.694
|
0.746
|
0.977
|
— | — | — | — | — |
No JSON data available for plots.